Helmholtz_software_repositories_20250810_092121.csv

software_repository
"https://github.com/jokergoo/sfcurve"
"https://github.com/4C-multiphysics/4C"
"https://gitlab.jsc.fz-juelich.de/CoE-RAISE/FZJ/ai4hpc/"
"https://github.com/JuDFTteam/aiida-kkr"
"https://github.com/JuDFTteam/aiida-spirit"
"https://gitlab.com/album-app/album"
"https://jugit.fz-juelich.de/iek-10/public/tools/alice2modelica"
"https://codebase.helmholtz.cloud/m-team/tools/alise"
"https://gitlab.cern.ch/allpix-squared/allpix-squared"
"https://github.com/INM-6/alpaca"
"https://github.com/alpaka-group/alpaka"
"https://gitlab.com/dlr-ve/esy/amiris/amiris"
"https://github.com/scverse/anndata"
"https://github.com/hifis-net/ansible-collection-toolkit"
"https://github.com/merenlab/anvio"
"https://github.com/arbor-sim/arbor/"
"https://git.gfz-potsdam.de/danschef/arosics"
"https://github.com/ARTIST-Association/ARTIST"
"https://github.com/geodynamics/aspect"
"https://github.com/atomec-project/atoMEC"
"https://github.com/mahan-hosseini/AutoGaitA"
"https://github.com/ardoco/ardoco.git"
"https://github.com/SMEISEN/AutoPQ"
"https://github.com/SMEISEN/AutoPV"
"https://github.com/SMEISEN/AutoWP"
"https://github.com/CCB-SB/Aviator"
"https://github.com/CliDyn"
"https://github.com/kit-data-manager/base-repo"
"https://github.com/marrlab/BaSiC"
"https://github.com/peng-lab/BaSiCPy"
"https://github.com/Ramy-Badr-Ahmed/Bending-Stiffness"
"https://gitlab.com/dlr-sy/beos"
"https://github.com/Ramy-Badr-Ahmed/Bifurcations-Discrete-Maps"
"https://github.com/Bonidia/BioAutoML"
"https://github.com/DLR-RM/BlenderProc"
"https://jugit.fz-juelich.de/mlz/bornagain"
"https://gitlab.com/dlr-sy/boxbeam"
"https://github.com/Deep-MI/brainprint"
"https://github.com/cadet/CADET-Core"
"https://github.com/JuBiotech/calibr8"
"https://codebase.helmholtz.cloud/cat4kit/cat4kit-docker"
"https://gitlab.dlr.de/catena/"
"https://github.com/FZJ-INM1-BDA/celldetection"
"https://github.com/theislab/cellrank"
"https://github.com/ChASE-library/ChASE"
"https://github.com/desy-ml/cheetah.git"
"https://github.com/ComPlat/chemotion_ELN"
"https://github.com/MarcoLandtHayen/climate_index_collection"
"https://github.com/tonitacker/CIMPredict"
"https://github.com/jokergoo/circlize"
"https://github.com/citation-file-format/citation-file-format"
"https://github.com/matthkarl/citychem"
"https://github.com/CliDyn/climsight"
"https://gitlab.iap.kit.edu/mreininghaus/cnpypp/"
"https://github.com/jokergoo/cola"
"https://zenodo.org/record/5724021"
"https://jugit.fz-juelich.de/iek-10/public/optimization/comando"
"https://github.com/Helmholtz-UFZ/CoMOLA"
"https://github.com/jokergoo/ComplexHeatmap"
"https://gitlab.desy.de/constellation/constellation/"
"https://github.com/CIPM-tools/CIPM"
"https://github.com/KIT-IAI/CopyPasteImputation"
"https://github.com/KIT-TVA/CorC"
"https://gitlab.iap.kit.edu/AirShowerPhysics/corsika"
"https://github.com/cosmoscout/cosmoscout-vr"
"https://github.com/cp2k/cp2k"
"https://github.com/Plant-Root-Soil-Interactions-Modelling/CPlantBox"
"https://gitlab.com/tango-controls/cppTango"
"https://github.com/CryoGrid/CryoGridCommunity_source"
"https://gitlab.desy.de/thomas.white/crystfel/"
"https://github.com/tudasc/CUAS-MPI"
"https://gitlab.jsc.fz-juelich.de/perftools/cubegui"
"https://gitlab.jsc.fz-juelich.de/perftools/cubelib"
"https://gitlab.jsc.fz-juelich.de/perftools/cubew"
"https://github.com/ComputationalRadiationPhysics/cuda_memtest"
"https://github.com/alpaka-group/cupla"
"https://github.com/lorenzobonaguro/cyCONDOR"
"https://github.com/European-XFEL/DAMNIT"
"https://codebase.helmholtz.cloud/dasf/dasf-messaging-python"
"https://github.com/FZJ-IEK3-VSA/DataDesc/"
"https://github.com/datalad/datalad"
"https://github.com/datalad/datalad-container"
"https://github.com/datalad/datalad-next"
"https://github.com/kalininalab/DataSAIL"
"https://github.com/datalad/datasalad.git"
"https://github.com/dCache/dcache"
"https://gitlab.com/qtb-hhu/marine/DeepLOKI"
"https://codebase.helmholtz.cloud/taimur.khan/DeepTrees"
"https://gitlab.com/deploy2zenodo/deploy2zenodo"
"https://github.com/gfzriesgos/deus"
"https://git.geomar.de/digital-earth/digital-earth-viewer"
"https://github.com/Materials-Data-Science-and-Informatics/dirschema"
"https://gitlab.com/dlr-sy/displam"
"https://github.com/PedestrianDynamics/DL4PuDe"
"https://github.com/ESMValGroup/ESMValTool"
"https://git.gfz-potsdam.de/id2/geoperil/easyWave"
"https://github.com/HPSCTerrSys/eCLM"
"https://github.com/rizac/egsim"
"https://github.com/theislab/ehrapy"
"https://github.com/robeme/lammps"
"https://github.com/NeuralEnsemble/elephant"
"https://jugit.fz-juelich.de/network-science-group/emipy"
"https://git.gfz-potsdam.de/EnMAP/GFZ_Tools_EnMAP_BOX/EnPT"
"https://github.com/jokergoo/EnrichedHeatmap"
"https://github.com/KIT-IAI/ePowCoRe"
"https://github.com/esm-tools/esm_tools"
"https://github.com/ESMValGroup/ESMValCore"
"https://github.com/FZJ-IEK3-VSA/FINE"
"https://github.com/FZJ-IEK3-VSA/HiSim"
"https://github.com/FZJ-IEK3-VSA/ETHOS_PeNALPS"
"https://github.com/FZJ-IEK3-VSA/ethos.REFLOW"
"https://github.com/FZJ-IEK3-VSA/ETHOS.zoomin"
"https://gitlab.kit.edu/julian.quinting/elias-2.0"
"https://github.com/Eventdisplay/Eventdisplay"
"https://github.com/Ramy-Badr-Ahmed/beta-faircore4eosc"
"https://github.com/FairRootGroup/FairMQ"
"https://gitlab.com/fame-framework/fame-io"
"https://github.com/fastscape-lem/fastscape"
"https://github.com/deep-MI/FastSurfer/"
"https://github.com/Deep-MI/FatSegNet"
"https://github.com/FESOM/fesom2"
"https://github.com/sscholz-UFZ/FishInspector"
"https://jugit.fz-juelich.de/iek-10/public/ict-platform/deployment/docker-swarm"
"https://codebase.helmholtz.cloud/m-team/oidc/flaat"
"https://iffgit.fz-juelich.de/fleur/fleur"
"https://github.com/BIMSBbioinfo/flexynesis"
"https://codeberg.org/forgejo-aneksajo/forgejo-aneksajo"
"https://github.com/uds-se/FormatFuzzer"
"https://github.com/FraCSPy/FraCSPy"
"https://jugit.fz-juelich.de/mlz/frida"
"https://github.com/Deep-MI/fsqc"
"https://gitlab.dlr.de/pf-plp/gaia-group"
"https://jugit.fz-juelich.de/iek-10/public/simulation/gasnetsim"
"https://git.gfz-potsdam.de/geomultisens"
"https://github.com/ginkgo-project/ginkgo/"
"https://git.gfz-potsdam.de/gipp/gipptools"
"https://git.joeyh.name/git/git-annex.git"
"https://github.com/FZJ-IEK3-VSA/geokit"
"https://github.com/Udopia/gbd"
"https://github.com/mknaranja/GMGPolar"
"https://iffgit.fz-juelich.de/k.koester/goac"
"https://github.com/ajacquey/golem"
"https://github.com/go-oidfed/lib"
"https://git.gfz-potsdam.de/gravis"
"https://github.com/sciapp/gr"
"https://github.com/GeoStat-Framework/GSTools"
"https://github.com/dlr-gtlab/gtlab-core.git"
"https://git.gfz-potsdam.de/habitat-sampler/HabitatSampler"
"https://github.com/MarieOestreich/hCoCena"
"https://github.com/helmholtz-analytics/heat"
"https://jugit.fz-juelich.de/iek-10/public/simulation/heatnetsim"
"https://codebase.helmholtz.cloud/heliport/heliport"
"https://codebase.helmholtz.cloud/research-software-directory/RSD-as-a-service"
"https://github.com/softwarepub/hermes"
"https://github.com/Ramy-Badr-Ahmed/Higgs-Dataset-Training"
"https://github.com/jokergoo/HilbertCurve"
"https://github.com/Deep-MI/hipsta"
"https://doi.org/10.5281/zenodo.8349365"
"https://github.com/johannespletzer/hypersonic-effects"
"https://git.gfz-potsdam.de/icgem"
"https://github.com/KabitGit/Ideal-Equilibrium-Oxygen-Membrane-Reactor"
"https://git.gfz-potsdam.de/igmas/igmas-releases"
"https://github.com/IPPL-framework/ippl"
"https://codebase.helmholtz.cloud/federico.diazcapriles/instdlr-testing/"
"https://github.com/jokergoo/InteractiveComplexHeatmap"
"https://github.com/martindyrba/DeepLearningInteractiveVis"
"https://gitlab.com/dlr-ve/esy/ioproc"
"https://github.com/xaratustrah/iqtools"
"https://github.com/ComputationalRadiationPhysics/isaac"
"https://gitlab.jsc.fz-juelich.de/jards-user-forum/jards"
"https://gitlab.jsc.fz-juelich.de/perftools/jcuber"
"https://github.com/JEMRIS/jemris"
"https://github.com/jplag/JPlag"
"https://github.com/Biomarker-Development-at-INM7"
"https://github.com/FZJ-JSC/JUBE"
"https://iffgit.fz-juelich.de/kkr/jukkr"
"https://github.com/juaml/julearn"
"https://github.com/LRydin/jumpdiff"
"https://go.fzj.de/jumper"
"https://github.com/PedestrianDynamics/jupedsim"
"https://github.com/kreuzert/jupyterhub-outpost"
"https://github.com/kreuzert/jupyterhub-outpostspawner"
"https://github.com/slcs-jsc/jurassic"
"https://github.com/FZJ-JSC/JURI"
"https://github.com/kaapana/kaapana"
"https://gitlab.com/iam-cms/kadi"
"https://github.com/KarlsruheGraphGeneration/KaGen"
"https://github.com/kahypar/"
"https://github.com/KaHIP/KaMinPar"
"https://github.com/kamping-site/kamping"
"https://github.com/molaupi/karri"
"https://github.com/Ramy-Badr-Ahmed/KD-Tree-Python"
"https://github.com/keyproject/key"
"https://github.com/LS-Lab/KeYmaeraX-release"
"https://github.com/KinFit/KinFit.git"
"https://github.com/LRydin/KramersMoyal"
"https://jugit.fz-juelich.de/mlz/kww"
"https://github.com/Deep-MI/lapy"
"https://jugit.fz-juelich.de/mlz/libcerf"
"https://github.com/LiberTEM/LiberTEM/"
"https://github.com/go-oidfed/lighthouse"
"https://github.com/lightning-uq-box/lightning-uq-box"
"https://jugit.fz-juelich.de/iek-10/public/optimization/linmog"
"https://github.com/ardoco/lissa-ratlr"
"https://github.com/alpaka-group/llama"
"https://github.com/FZJ-JSC/LLview"
"https://github.com/ajacquey/lynx"
"https://github.com/PoisonAlien/maftools"
"https://mainzelliste.de"
"https://github.com/domschrei/mallob"
"https://github.com/alpaka-group/mallocMC"
"https://github.com/MassBank"
"https://github.com/mala-project/mala"
"https://github.com/e0404/matRad"
"https://gitlab.com/dlr-sy/mcodac"
"https://github.com/rizac/me-compute"
"https://github.com/MITK/MITK"
"https://github.com/teamtomo/membrain-seg"
"https://github.com/atfric/MemRBC"
"https://zenodo.org/record/7101217#.ZAnXzSYo8UE"
"https://github.com/Ramy-Badr-Ahmed/Merkle-DAG-Matlab"
"https://github.com/bloech/MeshIt"
"https://gitlab.dkrz.de/MESSy/MESSy"
"https://codebase.helmholtz.cloud/metabolator/metabolator"
"https://github.com/al2na/methylKit"
"https://github.com/LRydin/MFDFA"
"https://git.ufz.de/mhm/mhm"
"https://github.com/ccb-sb/mibianto"
"https://gitlab.com/DLR-SY/micofam"
"https://github.com/micromechanics/indentationGUI"
"https://gitlab.desy.de/claus.kleinwort/millepede-ii"
"https://github.com/khoirulmuzakka/Minion"
"https://github.com/casus/minterpy"
"https://github.com/oncoray/mirp"
"https://gitlab.jsc.fz-juelich.de/esde/machine-learning/mlair"
"https://codebase.helmholtz.cloud/smid55/mmpxrt"
"https://git.gfz-potsdam.de/icdp-osg/mdis"
"https://github.com/julianreul/mode_behave"
"https://jugit.fz-juelich.de/IBG-1/ModSim/MooViE"
"https://codebase.helmholtz.cloud/m-team/oidc/ssh/motley_cue/"
"https://github.com/slcs-jsc/mptrac"
"https://github.com/Open-MSS/MSS"
"https://github.com/mtress/mtress"
"https://codebase.helmholtz.cloud/fwdc/multiphase/code"
"https://github.com/oidc-mytoken/server"
"https://github.com/nest/nest-simulator"
"https://github.com/nest/nestml"
"https://gitlab.desy.de/fs-mcp/nuclear-nexus"
"https://github.com/MIC-DKFZ/nnUNet"
"https://github.com/Ramy-Badr-Ahmed/Nodejs-TCP-Server-Client"
"https://github.com/Ramy-Badr-Ahmed/Nodejs-TLS-Server-Client"
"https://github.com/kit-data-manager/NovaCrate"
"https://github.com/rajewsky-lab/novosparc"
"https://codebase.helmholtz.cloud/m-team/o3as"
"https://jugit.fz-juelich.de/sms/odm2sms"
"https://github.com/oemof/oemof-solph/"
"https://github.com/go-oidfed/offa"
"https://github.com/indigo-dc/oidc-agent"
"https://git.opencarp.org/openCARP/openCARP"
"https://github.com/openFuelCell2/openFuelCell2"
"https://gitlab.opengeosys.org/ogs/ogs"
"https://github.com/openPMD/openPMD-api/"
"https://git.geomar.de/dam/osadcp_toolbox/"
"https://gitlab.com/qtb-hhu/marine/otter"
"https://github.com/PalladioSimulator"
"https://github.com/pan-training/training-catalogue"
"https://github.com/parflow/parflow"
"https://github.com/pasta-toolbox/bit_vector/"
"https://github.com/PDAF/PDAF"
"https://github.com/JuBiotech/peak-performance"
"https://github.com/PedestrianDynamics/PedPy"
"https://gitlab.jsc.fz-juelich.de/SLPP/pepc/pepc"
"https://github.com/PeriHub/PeriHub"
"https://github.com/PeriHub/PeriLab.jl"
"https://github.com/Helmholtz-AI-Energy/perun"
"https://jugit.fz-juelich.de/ped-dyn-emp/petrack"
"https://github.com/Ramy-Badr-Ahmed/php-codemeta-crosswalk"
"https://github.com/ComputationalRadiationPhysics/picongpu"
"https://github.com/BIMSBbioinfo/pigx"
"https://github.com/jokergoo/pkgndep"
"https://github.com/trixi-framework/PointNeighbors.jl"
"https://github.com/anikfal/PostWRF"
"https://git.gfz-potsdam.de/vlbi-data-analysis/port"
"https://gitlab.jsc.fz-juelich.de/slbio/profasi"
"https://github.com/Helmholtz-AI-Energy/propulate"
"https://github.com/hzi-braunschweig/pia-system"
"https://github.com/PtyLab/PtyLab.py"
"https://github.com/KIT-IAI/PyAPI-RTS"
"https://github.com/pycomlink/pycomlink"
"https://github.com/euro-cordex/py-cordex"
"https://github.com/hereon-GEMS/pydidas/"
"https://github.com/cmeessen/pyGMS"
"https://git.geomar.de/open-source/pyquickmaps"
"https://github.com/Parallel-in-Time/pySDC"
"https://gitlab.com/tango-controls/pytango"
"https://github.com/icatproject/python-icat"
"https://gitlab.com/dlr-sy/pyxmake"
"https://gitlab.com/quantum-computing-software/quapps"
"https://gitlab.com/quantum-computing-software/quark"
"https://github.com/ablab/quast/"
"https://github.com/johannespletzer/rf-of-hypersonic-trajectories/"
"https://github.com/ddRPB/rpb"
"https://github.com/DLR-RM/RAFCON"
"https://github.com/Ramy-Badr-Ahmed/Random-Simplex"
"https://github.com/wiesenfa/challengeR"
"https://github.com/hz-b/rayx"
"https://github.com/rcenvironment/rce"
"https://github.com/kit-data-manager/react-search-component"
"https://github.com/schreiber-lab/reflectorch"
"https://gitlab.com/dlr-ve/esy/remix/framework"
"https://github.com/ReStoreCpp/ReStore"
"https://github.com/jokergoo/rGREAT"
"https://github.com/hzi-bifo/RiboDetector"
"https://github.com/kit-data-manager/ro-crate-java"
"https://github.com/reactive-systems/RTLola-Frontend"
"https://github.com/reactive-systems/RTLola-Interpreter"
"https://git.gfz-potsdam.de/fernlab/products/data-portal/s2downloader"
"https://github.com/sciapp/sampledb"
"https://git.ufz.de/rdm-software/saqc"
"https://github.com/luhipi/sarvey"
"https://gitlab.jsc.fz-juelich.de/perftools/scalasca"
"https://github.com/scverse/scanpy"
"https://github.com/jalalmostafa/SciTS"
"https://gitlab.com/score-p/scorep"
"https://github.com/heiniglab/scPower"
"https://github.com/rizac/sdaas"
"https://github.com/seisbench/seisbench"
"https://github.com/SeisComP"
"https://codebase.helmholtz.cloud/hub-terra/sms/orchestration"
"https://gitlab.com/serghei-model/serghei"
"https://gitlab.com/dlr-ve/esy/sfctools/framework"
"https://gitlab.com/dlr-shepard"
"https://github.com/ByteHamster/ShockHash"
"https://github.com/ByteHamster/SicHash"
"https://github.com/Ramy-Badr-Ahmed/Signal-Processor"
"https://github.com/f-hader/SimCATS/"
"https://github.com/jokergoo/simona"
"https://github.com/IMSY-DKFZ/simpa"
"https://github.com/jokergoo/simplifyEnrichment"
"https://github.com/gammasim/simtools/"
"https://github.com/smash-transport/smash"
"https://github.com/SMG2S/SMG2S"
"https://github.com/Materials-Data-Science-and-Informatics/somesy"
"https://github.com/scverse/spatialdata/"
"https://codebase.helmholtz.cloud/ufz-sdi/spatialio"
"https://git.gfz-potsdam.de/geomultisens/spechomo"
"https://github.com/jokergoo/spiralize"
"https://github.com/spirit-code/spirit"
"https://github.com/DLR-RM/stable-baselines3"
"https://jugit.fz-juelich.de/mlz/steca"
"https://gitlab.com/dlr-sy/stmlab"
"https://github.com/rizac/stream2segment"
"https://github.com/eclipse-sumo/sumo"
"https://github.com/johannespletzer/supersonic-effects/"
"https://github.com/evanberkowitz/supervillain"
"https://github.com/Ramy-Badr-Ahmed/php-swh-client"
"https://github.com/DLR-AMR/t8code"
"https://github.com/tamarin-prover/tamarin-prover"
"https://github.com/DLR-FT/TBT-Segmentation"
"https://jugit.fz-juelich.de/ibg-3/ibg3_data_management/software/projects/tereno-doi/tdoi"
"https://codebase.helmholtz.cloud/micromagnetic-modeling/tetrax"
"https://github.com/DLR-SC/tigl"
"https://github.com/jakobrunge/tigramite"
"https://codebase.helmholtz.cloud/ufz-tsm/tsm-orchestration"
"https://git.gfz-potsdam.de/id2/tsm/tsm.docker-compose"
"https://github.com/DLR-SC/tixi"
"https://git.geomar.de/open-source/tomato-toolboxes/tomato"
"https://github.com/KudryashevLab/TomoBEAR"
"https://github.com/tfp-photonics/treams"
"https://github.com/locationtech-archived/geoperil"
"https://github.com/usadellab/Trimmomatic"
"https://github.com/trixi-framework/Trixi.jl"
"https://github.com/trixi-framework/TrixiParticles.jl"
"https://github.com/HPSCTerrSys/TSMP"
"https://github.com/HPSCTerrSys/TSMP2"
"https://github.com/kit-data-manager/pit-service"
"https://github.com/dlr-eoc/ukis-csmask"
"https://github.com/DLR-VF/ULTImodel"
"https://gitlab.awi.de/bkoch/ume"
"https://github.com/UNICORE-EU/"
"https://github.com/casus/uqtestfuns"
"https://github.com/martinottopaul/UrbEm"
"https://github.com/DLR-VF/UrMoAC"
"https://github.com/andyco98/UTILE-Oxy/"
"https://github.com/bihealth/varfish-server"
"https://github.com/rbuehler/vasca"
"https://github.com/cmeessen/VelocityConversion"
"https://gitlab.com/dlr-ve/esy/vencopy/vencopy"
"https://codebase.helmholtz.cloud/mussel/netlogo-northsea-species.git"
"https://iffgit.fz-juelich.de/vitess/vitess/-/releases"
"https://github.com/vitruv-tools/Vitruv"
"https://github.com/BIMSBbioinfo/VoltRon"
"https://github.com/indigo-dc/tts"
"https://gitlab.com/one-touch-pipeline/weskit"
"https://git.gsi.de/phelix/lv/wombat_ce"
"https://github.com/riesgos/gfz-command-line-tool-repository"
"https://git.gfz-potsdam.de/fernlab/products/furuno/wrainfo"
"https://github.com/DataFlowAnalysis/DataFlowAnalysis"
"https://gitlab.dlr.de/xdibias/xdibias"
"https://gitlab.desy.de/cdt/xraypac"