Use purposefully invalid URLs.

This commit updates the default entity creation preferences so that the
default base IRI is no longer http://www.co-ode.org/ontologies/ont.owl,
since the www.co-ode.org domain is now reportedly being used for
fraudulent/malicious activities.

We use instead `http://example.invalid/`, to make it clear that this is
purely a _default_ IRI that the user should replace by something more
appropriate.

The `.invalid` top-level domain is guaranteed never to resolve to
anything (as per RFCs 2606 and 6761), so there should be no risk that it
could later be used for malicious purposes.

We also update all the ontologies used in tests (such as the pizza
ontology) to similarly use the `example.invalid` domain name.

closes #807

Author: gouttegd

protege-editor-owl/src/main/java/org/protege/editor/owl/model/classexpression/anonymouscls/AnonymousDefinedClassManager.java

@@ -29,7 +29,7 @@ public class AnonymousDefinedClassManager implements Disposable {
 
     public static final String ID = AnonymousDefinedClassManager.class.getName();
 
-    private static final String DEFAULT_ANON_CLASS_URI_PREFIX = "http://www.co-ode.org/ontologies/owlx/anon#";
+    private static final String DEFAULT_ANON_CLASS_URI_PREFIX = "http://example.invalid/ontologies/owlx/anon#";
 
     private static final URI DEFAULT_ANON_CLASS_ANNOTATION_URI = URI.create(DEFAULT_ANON_CLASS_URI_PREFIX + "anonClass");
 

protege-editor-owl/src/main/java/org/protege/editor/owl/model/entity/EntityCreationPreferences.java

@@ -66,7 +66,7 @@ private static Preferences getPrefs() {
 
     public static IRI getDefaultBaseIRI() {
         Preferences prefs = getPrefs();
-        String baseIRIStr = prefs.getString(DEFAULT_BASE_URI, "http://www.co-ode.org/ontologies/ont.owl#");
+        String baseIRIStr = prefs.getString(DEFAULT_BASE_URI, "http://example.invalid/ontologies/ont.owl#");
         return IRI.create(baseIRIStr);
     }
 

protege-editor-owl/src/test/java/org/protege/editor/owl/model/hierarchy/AssertedClassHierarchyTest.java

@@ -16,7 +16,7 @@
 
 public class AssertedClassHierarchyTest {
 
-    public static String NEW_ONTOLOGY_URI = "http://www.tigraworld.com/protege/1";
+    public static String NEW_ONTOLOGY_URI = "http://example.invalid/protege/1";
 
     private OWLOntologyManager manager;
     private OWLDataFactory factory;
@@ -45,7 +45,7 @@ protected OWLOntology installOntology(String path) throws OWLOntologyCreationExc
 
     @Test
     public void testSimpleLoop() throws OWLOntologyCreationException, URISyntaxException, OWLOntologyChangeException {
-        String namespace = "http://tigraworld.com/protege/simpleLoop.owl#";
+        String namespace = "http://example.invalid/protege/simpleLoop.owl#";
         installOntology("src/test/resources/ontologies/tree/simpleLoop.owl");
         OWLOntology ontology = manager.getOntologies().iterator().next();
 
@@ -76,7 +76,7 @@ public void testSimpleLoop() throws OWLOntologyCreationException, URISyntaxExcep
 
     @Test
     public void testTwoParents() throws OWLOntologyCreationException, URISyntaxException {
-        String namespace = "http://tigraworld.com/protege/twoParents.owl#";
+        String namespace = "http://example.invalid/protege/twoParents.owl#";
         installOntology("src/test/resources/ontologies/tree/twoParents.owl");
 
         OWLClass a = factory.getOWLClass(IRI.create(namespace + "A"));
@@ -99,7 +99,7 @@ public void testTwoParents() throws OWLOntologyCreationException, URISyntaxExcep
 
     @Test
     public void testAddGCA() throws OWLOntologyCreationException, URISyntaxException, OWLOntologyChangeException, OWLRendererException {
-        String namespace = "http://tigraworld.com/protege/twoParents.owl#";
+        String namespace = "http://example.invalid/protege/twoParents.owl#";
         installOntology("src/test/resources/ontologies/tree/twoParents.owl");
 
         OWLOntology ontology = manager.getOntologies().iterator().next();

protege-editor-owl/src/test/java/org/protege/editor/owl/model/library/Folder_IT.java

@@ -28,9 +28,9 @@ public class Folder_IT extends TestCase {
     public static final String PIZZA_FILE       = "pizza.owl";
     public static final String PHOTOGRAPHY_FILE = "photography.owl";
 
-    public static final String AMINO_ACID_NS  = "http://www.co-ode.org/ontologies/amino-acid/2009/02/16/amino-acid.owl";
-    public static final String PIZZA_NS       = "http://www.co-ode.org/ontologies/pizza/2005/10/18/pizza.owl";
-    public static final String PHOTOGRAPHY_NS = "http://www.co-ode.org/ontologies/photography/photography.owl";
+    public static final String AMINO_ACID_NS  = "http://example.invalid/ontologies/amino-acid/2009/02/16/amino-acid.owl";
+    public static final String PIZZA_NS       = "http://example.invalid/ontologies/pizza/2005/10/18/pizza.owl";
+    public static final String PHOTOGRAPHY_NS = "http://example.invalid/ontologies/photography/photography.owl";
 
     public static final String CATALOG_FILE = "catalog-v001.xml";
 

protege-editor-owl/src/test/java/org/protege/editor/owl/model/library/XmlBaseTest.java

@@ -7,7 +7,7 @@
 import java.net.URI;
 
 public class XmlBaseTest extends TestCase {
-    public static final String PIZZA_NAME = "http://www.co-ode.org/ontologies/pizza/2005/10/18/pizza.owl";
+    public static final String PIZZA_NAME = "http://example.invalid/ontologies/pizza/2005/10/18/pizza.owl";
 
     public void testOwlXml() {
         File pizza = new File("src/test/resources/ontologies/update/pizza-xml.owl");

protege-editor-owl/src/test/java/org/protege/editor/owl/model/repository/RDFExtractorTest.java

@@ -11,15 +11,15 @@
 public class RDFExtractorTest extends TestCase {
     public static final String PIZZA_LOCATION  = "src/test/resources/ontologies/pizza.owl";
     public static final String PIZZA_LOCATION2 = "src/test/resources/ontologies/pizza-functional.owl";
-    public static final String PIZZA_NAME      = "http://www.co-ode.org/ontologies/pizza/2005/10/18/pizza.owl";
+    public static final String PIZZA_NAME      = "http://example.invalid/ontologies/pizza/2005/10/18/pizza.owl";
 
     public static final String AMBIGUOUS_LOCATION = "src/test/resources/ontologies/AmbiguousName.owl";
-    public static final String AMBIGUOUS_NAME     = "http://www.test.com/right.owl";
+    public static final String AMBIGUOUS_NAME     = "http://example.invalid/right.owl";
 
     public static final String VERSIONED_LOCATION  = "src/test/resources/ontologies/VersionedOntology.owl";
     public static final String VERSIONED_LOCATION2 = "src/test/resources/ontologies/VersionedOntology-functional.owl";
-    public static final String VERSIONED_NAME      = "http://www.tigraworld.com/protege/VersionedOntology.owl";
-    public static final String VERSIONED_VERSION   = "http://www.tigraworld.com/protege/Version1.owl";
+    public static final String VERSIONED_NAME      = "http://example.invalid/protege/VersionedOntology.owl";
+    public static final String VERSIONED_VERSION   = "http://example.invalid/protege/Version1.owl";
 
     public void testPizza01() {
         RdfXmlExtractor extractor = new RdfXmlExtractor();

protege-editor-owl/src/test/resources/ontologies/AmbiguousName.owl

@@ -10,17 +10,17 @@
 ]>
 
 
-<rdf:RDF xmlns="http://www.test.com/Ambiguous.owl#"
-     xml:base="http://www.test.com/Ambiguous.owl"
+<rdf:RDF xmlns="http://example.invalid/Ambiguous.owl#"
+     xml:base="http://example.invalid/Ambiguous.owl"
      xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:owl="http://www.w3.org/2002/07/owl#">
-    <owl:Ontology rdf:about="http://www.test.com/wrong.owl"/>
-    <owl:Ontology rdf:about="http://www.test.com/right.owl">
+    <owl:Ontology rdf:about="http://example.invalid/wrong.owl"/>
+    <owl:Ontology rdf:about="http://example.invalid/right.owl">
       <owl:imports>
-        <owl:Ontology rdf:about="http://www.test.com/wrong.owl"/>
+        <owl:Ontology rdf:about="http://example.invalid/wrong.owl"/>
       </owl:imports>
     </owl:Ontology>
 

protege-editor-owl/src/test/resources/ontologies/VersionedOntology-functional.owl

@@ -6,6 +6,6 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
 
 
-Ontology(<http://www.tigraworld.com/protege/VersionedOntology.owl>
-<http://www.tigraworld.com/protege/Version1.owl>
+Ontology(<http://example.invalid/protege/VersionedOntology.owl>
+<http://example.invalid/protege/Version1.owl>
 )

protege-editor-owl/src/test/resources/ontologies/VersionedOntology.owl

@@ -9,14 +9,14 @@
 ]>
 
 
-<rdf:RDF xmlns="http://www.tigraworld.com/protege/VersionedOntology.owl#"
-     xml:base="http://www.tigraworld.com/protege/VersionedOntology.owl"
+<rdf:RDF xmlns="http://example.invalid/protege/VersionedOntology.owl#"
+     xml:base="http://example.invalid/protege/VersionedOntology.owl"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:owl="http://www.w3.org/2002/07/owl#">
-    <owl:Ontology rdf:about="http://www.tigraworld.com/protege/VersionedOntology.owl">
-        <owl:versionIRI rdf:resource="http://www.tigraworld.com/protege/Version1.owl"/>
+    <owl:Ontology rdf:about="http://example.invalid/protege/VersionedOntology.owl">
+        <owl:versionIRI rdf:resource="http://example.invalid/protege/Version1.owl"/>
     </owl:Ontology>
 </rdf:RDF>