pytest

Convert SPA native python loops to numpy operations #4383

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Run time

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Job	Run time
test (macos-latest, 3.9, bare)	1m 27s
test (ubuntu-latest, 3.12, bare)	58s
test (macos-latest, 3.11, bare)	49s
test (ubuntu-latest, 3.12, conda)	2m 1s
test (windows-latest, 3.10, conda)	4m 31s
test (ubuntu-latest, 3.11, conda)	1m 53s
test (macos-latest, 3.12, bare)	50s
test (ubuntu-latest, 3.10, conda)	2m 2s
test (ubuntu-latest, 3.9, bare)	58s
test (ubuntu-latest, 3.13, bare)	1m 0s
test (ubuntu-latest, 3.10, bare)	56s
test (ubuntu-latest, 3.11, bare)	1m 1s
test (windows-latest, 3.12, conda)	4m 5s
test (ubuntu-latest, 3.13, conda)	2m 34s
test (ubuntu-latest, 3.9, conda)	2m 15s
test (windows-latest, 3.9, conda)	1m 37s
test (macos-latest, 3.10, bare)	1m 14s
test (windows-latest, 3.13, conda)	4m 46s
test (ubuntu-latest, 3.9, conda, -min)	57s
test (windows-latest, 3.11, conda)	3m 49s
test (macos-latest, 3.13, bare)	51s
	40m 34s