Quarto
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DescriptionMy book, Visualizing Multivariate Data and Models in R, has grown long enough that some chapters will be online-only (HTML) and excluded from the printed PDF:
The current What I want
Options consideredHere are a few things I'm considering. I would appreciate guidance from anyone on this discussion forum. Option 1: Remove from
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Replies: 5 comments 6 replies
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@friendly Please avoid unverified LLMs outputs. These do not help and that's for the LLM user to validate the output of his/her prompt. Now my answer: use project's profile by following the documentation you've linked. Edit: profiles are the way to have different configurations which you can complement with the conditional content div. |
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I've just spent ~10 non-productive days trying to sort out a series of problems with the building of HTML and PDF versions of my book. A couple of these were very hairy, involving aspects of Quarto / pandoc / LaTeX, so yes, I did try to get some help from Claude in solving these. Mostly successful, some beyond my ken, and I think that's a proper use of LLMs. That said, the project profiles idea sounds like it can address this need. In fact, this desire for slightly different HTML / PDF versions seems like an ideal use case for profiles, with better motivation than the examples in https://quarto.org/docs/projects/profiles.html |
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FYI, I do and did these kind of things in the past (including a python book made in Quarto with PDF/LaTeX and HTML as outputs). You can help Claude by:
These will save you some time and tokens. Regarding the documentation examples, if you have a concrete idea, you can suggest it in an "documentation" issue.
For example: |
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Profiles are the right approach here. To answer your questions directly: 1. 2. No built-in per-chapter format exclusion, but profiles solve this cleanly without needing one. 3. Cross-references to missing chapters won't gracefully degrade. In PDF (LaTeX), you'll get
One note on using LLMs for Quarto questions — as Mickaël pointed out,
These tools work best when you use them to check what the LLM suggested rather than posting the raw output. That way you get the exploration benefit without the hallucination risk. |
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Project's profiles come with conditional content ability: These can be used for spans and divs to make blocks or inline text appear for one profile and not the other. Source: the documentation on profile https://quarto.org/docs/projects/profiles.html |
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Nice idea to indeed use Thanks a lot for the addition ! |
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Regarding the Lua filter, no promises, but I might be able to share something I already have. Related to: |
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@friendly I had to adapt a previous demo and extract/adapt my Lua filter, but here is a concrete real example for your use case. Hope this helps get you started. For convenience the page/chapter cross-reference Lua filter in static formats (also in the demo above): Lua code (archive)--- Off-Page Cross-Links - Lua Filter
--- @module "offpage-crosslinks"
--- @license MIT
--- @copyright 2026 Mickaël Canouil
--- @author Mickaël Canouil
--- @version 0.1.0
--- @brief Rewrite cross-page links for non-HTML formats using site-url.
--- @description In non-HTML output formats, relative links to other pages
--- in a Quarto website or book project are broken. This filter rewrites
--- those links to absolute URLs using the project's site-url, so readers
--- can follow them to the live HTML site.
-- ============================================================================
-- MODULE-LEVEL VARIABLES
-- ============================================================================
--- @type string|nil The resolved site URL from project metadata
local site_url = nil
-- ============================================================================
-- HELPER FUNCTIONS (PRIVATE)
-- ============================================================================
--- Read site-url from QUARTO_EXECUTE_INFO project metadata.
--- Tries website.site-url first, then book.site-url.
--- Workaround for https://github.com/quarto-dev/quarto-cli/issues/13029
--- where project-level metadata (website/book) is not available in the
--- document Meta passed to Lua filters.
--- @return string|nil The site-url value, or nil if unavailable
local function get_site_url_from_execute_info()
local path = os.getenv('QUARTO_EXECUTE_INFO')
if not path then return nil end
local file = io.open(path, 'r')
if not file then return nil end
local content = file:read('*a')
file:close()
if not content or content == '' then return nil end
local ok, info = pcall(quarto.json.decode, content)
if not ok or not info then return nil end
local format_meta = info['format'] and info['format']['metadata']
if not format_meta then return nil end
if format_meta['website'] and format_meta['website']['site-url'] then
return format_meta['website']['site-url']
elseif format_meta['book'] and format_meta['book']['site-url'] then
return format_meta['book']['site-url']
end
return nil
end
--- Read site-url from document metadata as a fallback.
--- Tries website.site-url, then book.site-url.
--- @param meta table The document metadata table
--- @return string|nil The site-url value, or nil if not found
local function get_site_url_from_meta(meta)
local website = meta['website']
if website and website['site-url'] then
return pandoc.utils.stringify(website['site-url'])
end
local book = meta['book']
if book and book['site-url'] then
return pandoc.utils.stringify(book['site-url'])
end
return nil
end
--- Check whether a link target is a relative cross-page link.
--- Returns true for targets that point to .html or .qmd files
--- without an absolute URI scheme.
--- @param target string The link target URL
--- @return boolean True if the target is a relative page link
local function is_relative_page_link(target)
if not target or target == '' then return false end
if target:match('^#') then return false end
if target:match('^%a[%a%d+%-%.]*:') then return false end
if target:match('%.html[#?]') or target:match('%.html$') then return true end
if target:match('%.qmd[#?]') or target:match('%.qmd$') then return true end
return false
end
--- Rewrite a relative page link target to an absolute URL.
--- Normalises .qmd extensions to .html, strips leading ./, and
--- prepends the site-url.
--- @param target string The original relative link target
--- @param base_url string The site-url to prepend
--- @return string The rewritten absolute URL
local function rewrite_target(target, base_url)
local rewritten = target:gsub('%.qmd([#?])', '.html%1'):gsub('%.qmd$', '.html')
rewritten = rewritten:gsub('^%./', '')
local separator = base_url:match('/$') and '' or '/'
return base_url .. separator .. rewritten
end
-- ============================================================================
-- FILTER EXPORT
-- ============================================================================
return {
{
-- Resolve site-url from project metadata.
-- Skips entirely for HTML formats where cross-page links already work.
Meta = function(meta)
if quarto.doc.is_format('html') then return nil end
site_url = get_site_url_from_execute_info()
if not site_url then
site_url = get_site_url_from_meta(meta)
end
if not site_url then
quarto.log.warning('offpage-crosslinks: site-url not found in project metadata.')
end
return nil
end
},
{
-- Rewrite relative cross-page links to absolute URLs.
Link = function(el)
if not site_url then return nil end
if not is_relative_page_link(el.target) then return nil end
el.target = rewrite_target(el.target, site_url)
return el
end
}
} |
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This is all extremely helpful. Thanks so much for these detailed replies. But I'm still confused about one aspect: @cderv says:
But the documentation on profile groups, https://quarto.org/docs/projects/profiles.html#profile-groups, shows a I presently have the chapter ( In the current PDF, these appear as shown in the bookmarks below (why are some of these are duplicated??), with the Subject and Author indices at the end: 
If I switch this to profile groups, would I just delete that |
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See the example I provided, you can see that one appendix is online only. The example should give you everything you need. |
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@mcanouil Your help was also instructive about how to work with LLMs on such projects. You helped me teach Claude a lesson: |
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Profiles are the right approach here. To answer your questions directly:
1.
book: chapters:in a profile appends, it doesn't replace. Quarto's profile merging concatenates arrays and deduplicates. So your base_quarto.ymllists only the PDF chapters, and_quarto-online.ymladds the HTML-only ones. This is documented behavior: "objects and arrays are merged rather than overwritten" (see Metadata Merging).2. No built-in per-chapter format exclusion, but profiles solve this cleanly without needing one.
3. Cross-references to missing chapters won't gracefully degrade. In PDF (LaTeX), you'll get
??from an unresolvedef{}; in HTML you'd get bold?@sec-discrim. The build continues with a warn…