Change default bioc mirror to posit

gaborcsardi · gaborcsardi · commit 93010c2f4967 · 2026-06-16T11:23:50.000+02:00
bioconductor.org is unreliable for older bioc releases.
diff --git a/R/bioc.R b/R/bioc.R
@@ -309,7 +309,7 @@ bioconductor <- local({
     } else {
       bioc_version <- package_version(bioc_version)
     }
-    mirror <- Sys.getenv("R_BIOC_MIRROR", "https://bioconductor.org")
+    mirror <- Sys.getenv("R_BIOC_MIRROR", "https://bioconductor.posit.co")
     mirror <- getOption("BioC_mirror", mirror)
     repos <- c(
       BioCsoft = "{mirror}/packages/{bv}/bioc",

Original file line number	Diff line number	Diff line change
`@@ -309,7 +309,7 @@ bioconductor <- local({`
`309`	`309`	`} else {`
`310`	`310`	`bioc_version <- package_version(bioc_version)`
`311`	`311`	`}`
`312`		`- mirror <- Sys.getenv("R_BIOC_MIRROR", "https://bioconductor.org")`
	`312`	`+ mirror <- Sys.getenv("R_BIOC_MIRROR", "https://bioconductor.posit.co")`
`313`	`313`	`mirror <- getOption("BioC_mirror", mirror)`
`314`	`314`	`repos <- c(`
`315`	`315`	`BioCsoft = "{mirror}/packages/{bv}/bioc",`