Skip to content

Commit ac1e9eb

Browse files
committed
Check revdeps
1 parent c335b7a commit ac1e9eb

5 files changed

Lines changed: 178 additions & 2781 deletions

File tree

cran-comments.md

Lines changed: 11 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,17 @@
11
## R CMD check results
22

3-
There was one note: Found non-API calls to R: 'SETLENGTH', 'SET_GROWABLE_BIT', 'SET_TRUELENGTH'.
43

5-
These come from the upstream cpp11, and we're working to fix them there.
64

75
## revdepcheck results
86

9-
I did not check revdeps since the small bug fixes I made did not cause failures on previous submission.
7+
We checked 475 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
8+
9+
* We saw 2 new problems
10+
* We failed to check 2 packages (due to stan)
11+
12+
I supplied patches for both packages:
13+
14+
* https://github.com/akmn35/new.dist/pull/2
15+
* https://github.com/ihababusaif/tnl.Test/pull/1
16+
17+
Issues with CRAN packages are summarised below.

revdep/README.md

Lines changed: 10 additions & 80 deletions
Original file line numberDiff line numberDiff line change
@@ -1,86 +1,16 @@
11
# Revdeps
22

3-
## Failed to check (71)
3+
## Failed to check (2)
44

5-
|package |version |error |warning |note |
6-
|:---------------------------|:-------|:-----|:-------|:----|
7-
|airpart |? | | | |
8-
|annotatr |? | | | |
9-
|bacon |? | | | |
10-
|biodb |? | | | |
11-
|biodbChebi |? | | | |
12-
|biodbExpasy |? | | | |
13-
|biodbHmdb |? | | | |
14-
|biodbKegg |? | | | |
15-
|biodbLipidmaps |? | | | |
16-
|biodbMirbase |? | | | |
17-
|biodbNcbi |? | | | |
18-
|biodbNci |? | | | |
19-
|biodbUniprot |? | | | |
20-
|biscuiteer |? | | | |
21-
|CBEA |? | | | |
22-
|celda |? | | | |
23-
|cfdnakit |? | | | |
24-
|chimeraviz |? | | | |
25-
|chipenrich |? | | | |
26-
|chipenrich.data |? | | | |
27-
|circRNAprofiler |? | | | |
28-
|deconvR |? | | | |
29-
|decoupleR |? | | | |
30-
|DEXSeq |? | | | |
31-
|EpiDISH |? | | | |
32-
|epivizr |? | | | |
33-
|epivizrChart |? | | | |
34-
|epivizrData |? | | | |
35-
|GenomicSuperSignature |? | | | |
36-
|GenVisR |? | | | |
37-
|GEOfastq |? | | | |
38-
|geva |? | | | |
39-
|GladiaTOX |? | | | |
40-
|HMP16SData |? | | | |
41-
|HMP2Data |? | | | |
42-
|idr2d |? | | | |
43-
|ISAnalytics |? | | | |
44-
|LRcell |? | | | |
45-
|LRcellTypeMarkers |? | | | |
46-
|MAST |? | | | |
47-
|MMAPPR2data |? | | | |
48-
|MobilityTransformR |? | | | |
49-
|Moonlight2R |? | | | |
50-
|MoonlightR |? | | | |
51-
|MsBackendMassbank |? | | | |
52-
|MsBackendMgf |? | | | |
53-
|MsBackendMsp |? | | | |
54-
|MsBackendSql |? | | | |
55-
|MsCoreUtils |? | | | |
56-
|MsExperiment |? | | | |
57-
|MsFeatures |? | | | |
58-
|msgbsR |? | | | |
59-
|mslp |? | | | |
60-
|MSnbase |? | | | |
61-
|NormalyzerDE |? | | | |
62-
|ompBAM |? | | | |
63-
|pasilla |? | | | |
64-
|pRoloc |? | | | |
65-
|rstanarm |2.26.1 |1 | | |
66-
|sparsenetgls |? | | | |
67-
|Spectra |? | | | |
68-
|SpidermiR |? | | | |
69-
|StarBioTrek |? | | | |
70-
|STATegRa |? | | | |
71-
|StructuralVariantAnnotation |? | | | |
72-
|svaNUMT |? | | | |
73-
|svaRetro |? | | | |
74-
|transite |? | | | |
75-
|transomics2cytoscape |? | | | |
76-
|valse |0.1-0 |1 | | |
77-
|waddR |? | | | |
5+
|package |version |error |warning |note |
6+
|:------------|:-------|:-----|:-------|:----|
7+
|rstanarm |2.32.2 |1 | | |
8+
|SQLFormatteR |0.0.2 |1 | | |
789

79-
## New problems (3)
10+
## New problems (2)
8011

81-
|package |version |error |warning |note |
82-
|:-----------|:-------|:------|:-------|:------|
83-
|[attachment](problems.md#attachment)|0.4.0 |__+1__ | | |
84-
|[checkhelper](problems.md#checkhelper)|0.1.0 |__+1__ |__+1__ |__+1__ |
85-
|[doctest](problems.md#doctest)|0.2.0 |__+1__ | | |
12+
|package |version |error |warning |note |
13+
|:--------|:-------|:------|:-------|:----|
14+
|[new.dist](problems.md#newdist)|0.1.1 |__+1__ | | |
15+
|[tnl.Test](problems.md#tnltest)|0.1.0 |__+1__ | | |
8616

revdep/cran.md

Lines changed: 6 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -1,27 +1,22 @@
11
## revdepcheck results
22

3-
We checked 458 reverse dependencies (389 from CRAN + 69 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
3+
We checked 475 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
44

5-
* We saw 3 new problems
5+
* We saw 2 new problems
66
* We failed to check 2 packages
77

88
Issues with CRAN packages are summarised below.
99

1010
### New problems
1111
(This reports the first line of each new failure)
1212

13-
* attachment
13+
* new.dist
1414
checking tests ... ERROR
1515

16-
* checkhelper
17-
checking tests ... ERROR
18-
checking tests ... ERROR
19-
checking tests ... ERROR
20-
21-
* doctest
16+
* tnl.Test
2217
checking tests ... ERROR
2318

2419
### Failed to check
2520

26-
* rstanarm (NA)
27-
* valse (NA)
21+
* rstanarm (NA)
22+
* SQLFormatteR (NA)

0 commit comments

Comments
 (0)