docs: Update skill counts and Wave 12 Phase 2 completion status

- Update total skill count from 350+ to 447
- Update Rust/PyO3 skills from 17 to 19 (add collections/iterators and modules/functions)
- Add DSPy-PyO3 integration highlights (7 skills, 46 examples)
- Update WAVE12_PHASE2_FINAL_STATUS.md to reflect 100% completion
- Add all DSPy skill documentation and resources
- Fix outdated skill filenames in Rust INDEX

Author: rand

README.md

@@ -1,7 +1,7 @@
 # Atomic Skills for Claude Code
 
 [![Claude Code Plugin](https://img.shields.io/badge/Claude%20Code-Plugin-blue)](https://docs.claude.com/en/docs/claude-code/plugins)
-[![Skills](https://img.shields.io/badge/Skills-350+-green)](skills/)
+[![Skills](https://img.shields.io/badge/Skills-447-green)](skills/)
 [![License](https://img.shields.io/badge/License-MIT-yellow)](LICENSE)
 
 **Context-efficient development knowledge via progressive skill discovery**
@@ -21,7 +21,7 @@ This creates an challenging tradeoff between comprehensive coverage and context
 
 ## The Solution: Atomic Skills + Progressive Discovery
 
-### Atomic Skills (350+ total)
+### Atomic Skills (447 total)
 Each skill is **focused, self-contained, and composable**:
 - Average 320 lines - small enough to load quickly
 - Single responsibility - covers one clear topic
@@ -102,6 +102,12 @@ Complete implementation guides loaded only when needed:
 - **HuggingFace**: Hub, Transformers, Datasets, Spaces, AutoTrain (5 skills)
 - **Fine-tuning**: Unsloth, LoRA/PEFT, dataset prep (3 skills)
 
+**Rust & PyO3** (19 skills):
+- **DSPy-PyO3 Integration**: RAG pipelines, agents, async streaming, production deployment, optimization (7 skills with 36 production examples)
+- **Performance**: GIL management, parallel execution, data science, collections/iterators (6 skills)
+- **Web**: Axum frameworks, streaming responses, IPC, gRPC (2 skills)
+- **Production**: Packaging, testing, debugging, modules/functions/errors (4 skills with 20 examples)
+
 **Information Retrieval** (5 skills):
 - Search fundamentals (TF-IDF, BM25, Elasticsearch)
 - Vector search (dense retrieval, embeddings)
@@ -157,7 +163,7 @@ Complete implementation guides loaded only when needed:
 /plugin install https://github.com/rand/cc-polymath
 ```
 
-That's it! All 350+ skills and the `/skills` command are immediately available.
+That's it! All 447 skills and the `/skills` command are immediately available.
 
 **For local development or testing**:
 ```bash
@@ -289,6 +295,7 @@ cat skills/database/redpanda-streaming.md
         ├── networking/    # SSH, mTLS, VPN, NAT traversal (5)
         ├── tui/           # Terminal UI: Bubble Tea, Ratatui (5)
         ├── zig/           # Zig systems programming (6)
+        ├── rust/          # Rust & PyO3: DSPy integration, performance, production (19)
         ├── workflow/      # Beads task management (4)
         ├── data/          # ETL, streaming, batch (5)
         ├── deployment/    # Heroku, Netlify (6)
@@ -323,6 +330,7 @@ cat skills/database/redpanda-streaming.md
 | **Database** | Postgres, Mongo, Redis, Redpanda, Iceberg | 11 | discover-database |
 | **Caching** | Redis, HTTP, CDN, Service Workers | 7 | discover-caching |
 | **ML/AI** | DSPy, HuggingFace, Arize, GraphRAG | 33 | discover-ml |
+| **Rust/PyO3** | DSPy integration, RAG, agents, async, production | 19 | N/A |
 | **IR** | Elasticsearch, Vector DBs, Ranking | 5 | discover-ir |
 | **Systems** | WebAssembly, eBPF | 8 | discover-wasm, discover-ebpf |
 | **Collaboration** | GitHub, PRD, RFC | 17 | discover-collaboration, discover-product, discover-engineering |
@@ -516,4 +524,4 @@ Feel free to fork and adapt for your own use. Pull requests welcome.
 
 ---
 
-**350+ atomic skills** • **41 gateway Agent Skills** • **35+ categories** • **100% CI-validated**
+**447 atomic skills** • **41 gateway Agent Skills** • **35+ categories** • **100% CI-validated**

skills/ml/INDEX.md

@@ -2,7 +2,7 @@
 
 ## Category Overview
 
-**Total Skills**: 25
+**Total Skills**: 33
 **Category**: ml
 
 ## Skills in This Category
@@ -37,6 +37,26 @@ cat skills/ml/diffusion-model-basics.md
 
 ---
 
+### dspy-advanced-patterns.md
+**Description**: Advanced DSPy patterns including typed predictors with Pydantic, streaming responses, batching strategies, prompt versioning, context management, and dynamic signatures
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-advanced-patterns.md
+```
+
+---
+
+### dspy-agents.md
+**Description**: Building ReAct agents with tool use, memory, error recovery, streaming, and state machine patterns
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-agents.md
+```
+
+---
+
 ### dspy-assertions.md
 **Description**: Adding constraints and validation to DSPy programs with assertions and suggestions
 
@@ -47,6 +67,26 @@ cat skills/ml/dspy-assertions.md
 
 ---
 
+### dspy-compilation.md
+**Description**: Advanced DSPy compilation strategies including custom compilers, multi-stage compilation, caching, incremental compilation, and visualization
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-compilation.md
+```
+
+---
+
+### dspy-debugging.md
+**Description**: Debugging DSPy programs with output inspection, prompt inspection, execution tracing, profiling, and interactive debugging
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-debugging.md
+```
+
+---
+
 ### dspy-evaluation.md
 **Description**: Evaluating DSPy programs with metrics, Evaluate class, and performance analysis
 
@@ -57,6 +97,16 @@ cat skills/ml/dspy-evaluation.md
 
 ---
 
+### dspy-integrations.md
+**Description**: Integrating DSPy with LangChain, LlamaIndex, FastAPI, Gradio, MLflow, databases, Streamlit, and MCP/A2A protocols
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-integrations.md
+```
+
+---
+
 ### dspy-modules.md
 **Description**: Building composable prediction modules with Predict, ChainOfThought, ReAct, and custom modules
 
@@ -67,6 +117,16 @@ cat skills/ml/dspy-modules.md
 
 ---
 
+### dspy-multi-agent.md
+**Description**: Multi-agent systems with hierarchical, peer-to-peer, pipeline, and GEPA-optimized architectures for coordinated AI systems
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-multi-agent.md
+```
+
+---
+
 ### dspy-optimizers.md
 **Description**: Optimizing DSPy programs with teleprompters, BootstrapFewShot, MIPROv2, and compilation
 
@@ -77,6 +137,16 @@ cat skills/ml/dspy-optimizers.md
 
 ---
 
+### dspy-production.md
+**Description**: Production deployment patterns including Modal serverless, caching strategies, circuit breakers, monitoring with Prometheus, A/B testing, and blue-green deployments
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-production.md
+```
+
+---
+
 ### dspy-rag.md
 **Description**: Building Retrieval-Augmented Generation pipelines with DSPy and vector databases
 
@@ -107,6 +177,16 @@ cat skills/ml/dspy-signatures.md
 
 ---
 
+### dspy-testing.md
+**Description**: Testing DSPy programs with unit tests, mocking, integration tests, property-based testing with Hypothesis, and performance testing
+
+**Load this skill**:
+```bash
+cat skills/ml/dspy-testing.md
+```
+
+---
+
 ### graph-rag.md
 **Description**: Graph-based retrieval-augmented generation with entity extraction, community detection, and multihop reasoning
 
@@ -267,7 +347,7 @@ ls skills/ml/*.md
 cat skills/ml/custom-llm-evaluation.md
 cat skills/ml/diffusion-finetuning.md
 cat skills/ml/diffusion-model-basics.md
-# ... and 22 more
+# ... and 30 more
 ```
 
 ## Related Categories