Search results

Compatibility and recommendations for Stereo-seq data

Status: Open.

#31 In raphael-group/CalicoST;

· OMIC-coding opened on May 7, 2026

confused about the B allele count

Status: Open.

#30 In raphael-group/CalicoST;

· lichen2018 opened on Apr 2, 2026

why the bam files in CalicoST_example, simulated_example, and prostate_example are empty?

Status: Open.

#29 In raphael-group/CalicoST;

· lichen2018 opened on Mar 11, 2026

Providing normal spots when jointly running multiple slices

Status: Open.

#28 In raphael-group/CalicoST;

· James-Qiao opened on Jan 23, 2026

calicoST tumor purity estimation and cna run both end up filtering out all spots

Status: Open.

#27 In raphael-group/CalicoST;

· KSimi7 opened on Jan 22, 2026

Estimate of tumor proportion returns NA for most of the spots

Status: Open.

#26 In raphael-group/CalicoST;

· ElyasMo opened on Oct 23, 2025

Error in estimate purity

Status: Open.

#25 In raphael-group/CalicoST;

· palmfern opened on Oct 3, 2025

Error in parse_final_snp

Status: Open.

#24 In raphael-group/CalicoST;

· palmfern opened on Sep 25, 2025

Qustions about step run CalicoST

Status: Open.

#22 In raphael-group/CalicoST;

· vincentguo0418 opened on Apr 27, 2025

How to get the CN values matrix from results

Status: Open.

#21 In raphael-group/CalicoST;

· yanglq-bioinfo opened on Apr 16, 2025

UnboundLocalError

Status: Open.

#18 In raphael-group/CalicoST;

· kzb193 opened on Dec 29, 2024

compatible scipy version for frequent ".A error" in parse_final_snp.py, utils_IO.py, etc.

Status: Open.

#14 In raphael-group/CalicoST;

· wangmengbo opened on Nov 27, 2024