Merge pull request #56 from reactome/poetry-test

poetry-check

Author: heliamoh

.github/actions/install_python_poetry/action.yml

@@ -0,0 +1,16 @@
+name: 'Setup Python and Poetry'
+description: 'Setup Python environment and install Poetry'
+runs:
+  using: 'composite'
+  steps:
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.12'
+
+    - name: Install dependencies
+      shell: bash
+      run: |
+        pip install --upgrade pip
+        pip install poetry==1.8.4
+        poetry install --no-root

.github/actions/verify_imports.py

@@ -0,0 +1,42 @@
+import importlib.machinery
+import importlib.util
+import traceback
+from pathlib import Path
+
+# List all entry points here
+entry_points: list[Path] = list(
+    map(
+        Path("bin").joinpath,
+        [
+            "chat-chainlit.py",
+            "chat-fastapi.py",
+            "embeddings_manager",
+        ],
+    )
+)
+
+failed_imports: list[str] = []
+
+location: Path
+for location in entry_points:
+    name: str = location.stem
+    try:
+        loader = importlib.machinery.SourceFileLoader(name, str(location))
+        spec = importlib.util.spec_from_loader(name, loader)
+        if spec is None:
+            raise ModuleNotFoundError(name)
+        module = importlib.util.module_from_spec(spec)
+        loader.exec_module(module)
+    except ImportError:
+        failed_imports.append(name)
+        print(f"Failed to import {location} due to ImportError:")
+        traceback.print_exc()
+    except Exception as e:
+        print(f"Non-import error for {location}: {e}")
+        traceback.print_exc()
+
+if failed_imports:
+    print(f"Failed to import: {", ".join(failed_imports)}")
+    exit(1)
+else:
+    print("All entry points imported successfully.")

.github/workflows/ci.yml

@@ -21,23 +21,43 @@ jobs:
         steps:
             - uses: actions/checkout@v4
 
-            - name: Set up Python
-              uses: actions/setup-python@v4
-              with:
-                 python-version: '3.12'
-
-            - name: Install dependencies
-              run: |
-                  python -m pip install --upgrade pip
-                  pip install poetry
-                  poetry install --no-root
+            - name: Set up Python and Poetry
+              uses: ./.github/actions/install_python_poetry
 
             - name: Run linters
               run: |
                   poetry run ruff check .
                   poetry run mypy .
                   poetry run isort --check .
 
+    poetry-check:
+        if: ${{ github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' }}
+        runs-on: ${{ matrix.os }}
+        strategy:
+            matrix:
+                os: [ubuntu-latest, macos-13]
+
+        steps:
+            - uses: actions/checkout@v4
+
+            - name: Check poetry.lock for changes
+              id: check-poetry-lock
+              uses: tj-actions/changed-files@v45
+              with:
+                  files: poetry.lock
+
+            - name: Set up Python and Poetry
+              if: steps.check-poetry-lock.outputs.any_changed == 'true'
+              uses: ./.github/actions/install_python_poetry
+
+            - name: Verify Python imports
+              if: steps.check-poetry-lock.outputs.any_changed == 'true'
+              env:
+                  PYTHONPATH: ./bin:./src
+              run: |
+                poetry check
+                poetry run python ./.github/actions/verify_imports.py
+
     docker-build:
         runs-on: ubuntu-latest