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##fileformat=VCFv4.3
##source=Tumorlution
"##FORMAT=<ID=GT,Number=1,Type=String,Description=""Genotype""> "
"##FORMAT=<ID=AD,Number=A,Type=Integer,Description=""Allelic depths for the ref and alt alleles in the order listed"">"
"##FORMAT=<ID=AF,Number=A,Type=Float,Description=""Allele Frequency"">"
"##FORMAT=<ID=END,Number=1,Type=Integer,Description=""End position of the variant described in this record"">"
"##FORMAT=<ID=CF,Number=A,Type=Float,Description=""Cancer cell fraction"">"
"##FORMAT=<ID=SVTYPE,Number=1,Type=String,Description=""Type of structural variant"">"
"##FORMAT=SVLEN,Number=.,Type=Integer,Description=""Difference in length between REF and ALT alleles"">"
"##ALT=<ID=DUP,Description=""Duplication: region of elevated copy number relative to the reference"">"
"##ALT=<ID=INS,Description=""Insertion of novel sequence"">"
"##ALT=<ID=DEL,Description=""Deletion relative to the reference"">"
"##ALT=<ID=CNV,Description=""Copy number variable region"">"
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Met1 Met2 Met3 Met4 Met5 Met6
1 1403857 . C A . PASS GN=ATAD3C;ANN=Substitution GT:AD:AF:CF "1|0:86,35:0.289:1.000" "1|0:108,49:0.312:1.000" "1|0:118,47:0.285:1.000" "1|0:103,67:0.394:1.000" "1|0:76,46:0.377:1.000" "1|0:85,55:0.393:1.000"
1 36319099 . G A . PASS GN=AGO4;ANN=Substitution GT:AD:AF:CF "0|1:162,10:0.058:0.132" "0|1:163,1:0.006:0.000" "0|1:155,0:0.000:0.000" "0|1:169,1:0.006:0.000" "0|1:169,0:0.000:0.000" "0|1:160,0:0.000:0.000"
1 34041581 . T C . PASS . GT:AD:AF:CF "1|0:104,40:0.278:1.000" "1|0:199,1:0.005:0.000" "1|0:145,74:0.338:1.000" "1|0:166,0:0.000:0.000" "1|0:151,2:0.013:0.000" "1|0:58,42:0.420:1.000"
1 46839333 . T C . PASS . GT:AD:AF:CF "1|0:146,0:0.000:0.000" "1|0:149,1:0.007:0.000" "1|0:167,2:0.012:0.000" "1|0:132,0:0.000:0.000" "1|0:119,55:0.316:1.000" "1|0:143,0:0.000:0.000"
1 50923479 . T C . PASS . GT:AD:AF:CF "1|0:89,3:0.033:0.000" "1|0:158,0:0.000:0.000" "1|0:141,2:0.014:0.000" "1|0:154,2:0.013:0.000" "1|0:99,50:0.336:1.000" "1|0:189,1:0.005:0.000"
1 74557777 . T C . PASS . GT:AD:AF:CF "0|1:85,48:0.361:1.000" "0|1:95,56:0.371:1.000" "0|1:93,42:0.311:1.000" "0|1:73,46:0.387:1.000" "0|1:118,39:0.248:1.000" "0|1:106,48:0.312:1.000"
1 79061263 . T C . PASS . GT:AD:AF:CF "1|0:77,55:0.417:1.000" "1|0:126,64:0.337:1.000" "1|0:103,42:0.290:1.000" "1|0:93,52:0.359:1.000" "1|0:60,33:0.355:1.000" "1|0:103,56:0.352:1.000"
1 80566908 . T C . PASS . GT:AD:AF:CF "0|1:140,3:0.021:0.000" "0|1:122,27:0.181:0.460" "0|1:166,0:0.000:0.000" "0|1:185,1:0.005:0.000" "0|1:129,0:0.000:0.000" "0|1:116,1:0.009:0.000"
1 109632063 . T C . PASS . GT:AD:AF:CF "0|1:177,1:0.006:0.000" "0|1:166,0:0.000:0.000" "0|1:136,68:0.333:1.000" "0|1:161,0:0.000:0.000" "0|1:225,2:0.009:0.000" "0|1:168,1:0.006:0.000"
1 118030132 . T C . PASS . GT:AD:AF:CF "1|0:159,1:0.006:0.000" "1|0:176,0:0.000:0.000" "1|0:88,61:0.409:1.000" "1|0:135,1:0.007:0.000" "1|0:144,1:0.007:0.000" "1|0:150,0:0.000:0.000"
1 122519836 . T C . PASS . GT:AD:AF:CF "1|0:91,32:0.260:0.804" "1|0:124,0:0.000:0.000" "1|0:175,1:0.006:0.000" "1|0:127,0:0.000:0.000" "1|0:128,0:0.000:0.000" "1|0:151,1:0.007:0.000"
1 122904753 . T C . PASS . GT:AD:AF:CF "0|1:142,0:0.000:0.000" "0|1:152,0:0.000:0.000" "0|1:187,1:0.005:0.000" "0|1:94,54:0.365:1.000" "0|1:151,1:0.007:0.000" "0|1:210,0:0.000:0.000"
1 154842200 . - GCTGCTGCTGCT . PASS GN=KCNN3;ANN=Insertion GT:AD:AF:CF "0|1:97,15:0.134:0.396" "0|1:152,0:0.000:0.000" "0|1:79,0:0.000:0.000" "0|1:179,0:0.000:0.000" "0|1:170,0:0.000:0.000" "0|1:132,0:0.000:0.000"
1 152836222 . T C . PASS . GT:AD:AF:CF "1|0:121,53:0.305:1.000" "1|0:93,53:0.363:1.000" "1|0:107,71:0.399:1.000" "1|0:94,39:0.293:1.000" "1|0:85,46:0.351:1.000" "1|0:90,54:0.375:1.000"
1 156940808 . T C . PASS . GT:AD:AF:CF "0|1:188,2:0.011:0.000" "0|1:102,1:0.010:0.000" "0|1:127,1:0.008:0.000" "0|1:87,46:0.346:1.000" "0|1:153,1:0.006:0.000" "0|1:136,0:0.000:0.000"
1 174509978 . T C . PASS . GT:AD:AF:CF "1|0:65,0:0.000:0.000" "1|0:158,0:0.000:0.000" "1|0:156,0:0.000:0.000" "1|0:160,1:0.006:0.000" "1|0:75,38:0.336:1.000" "1|0:210,0:0.000:0.000"
1 219831615 . T C . PASS . GT:AD:AF:CF "1|0:140,0:0.000:0.000" "1|0:116,0:0.000:0.000" "1|0:144,2:0.014:0.000" "1|0:90,0:0.000:0.000" "1|0:192,1:0.005:0.000" "1|0:81,9:0.100:0.199"
1 220809308 . C T . PASS GN=MARK1;ANN=Silent GT:AD:AF:CF "0|1:117,1:0.008:0.000" "0|1:110,1:0.009:0.000" "0|1:125,11:0.081:0.178" "0|1:153,0:0.000:0.000" "0|1:145,0:0.000:0.000" "0|1:119,1:0.008:0.000"
2 4896193 . T C . PASS . GT:AD:AF:CF "0|1:104,1:0.010:0.000" "0|1:207,1:0.005:0.000" "0|1:178,0:0.000:0.000" "0|1:100,3:0.029:0.000" "0|1:105,50:0.323:1.000" "0|1:151,0:0.000:0.000"
2 22015128 . T C . PASS . GT:AD:AF:CF "1|0:154,1:0.006:0.000" "1|0:173,0:0.000:0.000" "1|0:134,2:0.015:0.000" "1|0:172,1:0.006:0.000" "1|0:92,43:0.319:1.000" "1|0:149,0:0.000:0.000"
2 35555682 . T C . PASS . GT:AD:AF:CF "1|0:98,54:0.355:1.000" "1|0:163,1:0.006:0.000" "1|0:127,0:0.000:0.000" "1|0:165,0:0.000:0.000" "1|0:122,1:0.008:0.000" "1|0:126,1:0.008:0.000"
2 45720470 . T C . PASS . GT:AD:AF:CF "1|0:117,0:0.000:0.000" "1|0:157,0:0.000:0.000" "1|0:135,1:0.007:0.000" "1|0:153,1:0.006:0.000" "1|0:103,52:0.335:1.000" "1|0:203,2:0.010:0.000"
2 53338118 . T C . PASS . GT:AD:AF:CF "0|1:133,0:0.000:0.000" "0|1:117,2:0.017:0.000" "0|1:91,0:0.000:0.000" "0|1:97,34:0.260:0.606" "0|1:147,1:0.007:0.000" "0|1:121,2:0.016:0.000"
2 83813970 . T C . PASS . GT:AD:AF:CF "1|0:72,39:0.351:1.000" "1|0:83,37:0.308:1.000" "1|0:166,76:0.314:1.000" "1|0:128,65:0.337:1.000" "1|0:124,74:0.374:1.000" "1|0:157,73:0.317:1.000"
2 92156909 . T C . PASS . GT:AD:AF:CF "1|0:98,52:0.347:1.000" "1|0:79,35:0.307:1.000" "1|0:57,36:0.387:1.000" "1|0:79,48:0.378:1.000" "1|0:98,45:0.315:1.000" "1|0:93,51:0.354:1.000"
2 96758539 . T C . PASS . GT:AD:AF:CF "1|0:156,2:0.013:0.000" "1|0:164,0:0.000:0.000" "1|0:91,51:0.359:1.000" "1|0:115,0:0.000:0.000" "1|0:138,0:0.000:0.000" "1|0:148,1:0.007:0.000"
2 107262567 . T C . PASS . GT:AD:AF:CF "1|0:125,1:0.008:0.000" "1|0:129,0:0.000:0.000" "1|0:104,1:0.010:0.000" "1|0:214,2:0.009:0.000" "1|0:152,16:0.095:0.190" "1|0:144,0:0.000:0.000"
2 118989263 . T C . PASS . GT:AD:AF:CF "1|0:182,1:0.005:0.000" "1|0:103,11:0.096:0.177" "1|0:118,0:0.000:0.000" "1|0:137,0:0.000:0.000" "1|0:123,0:0.000:0.000" "1|0:164,0:0.000:0.000"
2 138160424 . T C . PASS . GT:AD:AF:CF "1|0:109,64:0.370:1.000" "1|0:153,1:0.006:0.000" "1|0:119,1:0.008:0.000" "1|0:121,1:0.008:0.000" "1|0:124,0:0.000:0.000" "1|0:134,0:0.000:0.000"
2 169830328 . A G . PASS GN=ABCB11;ANN=Substitution GT:AD:AF:CF "1|0:137,1:0.007:0.000" "1|0:119,0:0.000:0.000" "1|0:133,8:0.057:0.107" "1|0:153,2:0.013:0.000" "1|0:112,0:0.000:0.000" "1|0:120,1:0.008:0.000"
2 165539093 . T C . PASS . GT:AD:AF:CF "0|1:185,2:0.011:0.000" "0|1:151,0:0.000:0.000" "0|1:167,0:0.000:0.000" "0|1:145,1:0.007:0.000" "0|1:106,62:0.369:1.000" "0|1:110,1:0.009:0.000"
2 208837268 . T C . PASS . GT:AD:AF:CF "0|1:99,2:0.020:0.000" "0|1:188,1:0.005:0.000" "0|1:101,12:0.106:0.264" "0|1:157,1:0.006:0.000" "0|1:175,0:0.000:0.000" "0|1:192,1:0.005:0.000"
2 215726229 . T C . PASS . GT:AD:AF:CF "0|1:152,1:0.007:0.000" "0|1:136,1:0.007:0.000" "0|1:140,86:0.381:1.000" "0|1:177,0:0.000:0.000" "0|1:100,1:0.010:0.000" "0|1:217,0:0.000:0.000"
3 5251748 . T C . PASS . GT:AD:AF:CF "1|0:103,37:0.264:1.000" "1|0:69,44:0.389:1.000" "1|0:73,38:0.342:1.000" "1|0:79,53:0.402:1.000" "1|0:66,38:0.365:1.000" "1|0:66,51:0.436:1.000"
3 11488261 . T C . PASS . GT:AD:AF:CF "0|1:127,70:0.355:1.000" "0|1:132,1:0.008:0.000" "0|1:115,1:0.009:0.000" "0|1:169,1:0.006:0.000" "0|1:153,1:0.006:0.000" "0|1:140,2:0.014:0.000"
3 11554245 . T C . PASS . GT:AD:AF:CF "1|0:77,26:0.252:1.000" "1|0:82,55:0.401:1.000" "1|0:107,65:0.378:1.000" "1|0:148,64:0.302:1.000" "1|0:94,46:0.329:1.000" "1|0:82,41:0.333:1.000"
3 19415854 . T C . PASS . GT:AD:AF:CF "1|0:109,65:0.374:1.000" "1|0:82,45:0.354:1.000" "1|0:114,50:0.305:1.000" "1|0:90,45:0.333:1.000" "1|0:99,58:0.369:1.000" "1|0:124,62:0.333:1.000"
3 21215064 . T C . PASS . GT:AD:AF:CF "0|1:98,42:0.300:1.000" "0|1:91,51:0.359:1.000" "0|1:87,57:0.396:1.000" "0|1:89,47:0.346:1.000" "0|1:86,48:0.358:1.000" "0|1:54,29:0.349:1.000"
3 26106264 . T C . PASS . GT:AD:AF:CF "1|0:146,0:0.000:0.000" "1|0:116,59:0.337:1.000" "1|0:124,0:0.000:0.000" "1|0:161,1:0.006:0.000" "1|0:191,0:0.000:0.000" "1|0:153,0:0.000:0.000"
3 31485852 . T C . PASS . GT:AD:AF:CF "0|1:104,60:0.366:1.000" "0|1:157,0:0.000:0.000" "0|1:146,1:0.007:0.000" "0|1:174,0:0.000:0.000" "0|1:135,1:0.007:0.000" "0|1:192,0:0.000:0.000"
3 36795661 . T C . PASS . GT:AD:AF:CF "0|1:145,80:0.356:1.000" "0|1:84,1:0.012:0.000" "0|1:155,0:0.000:0.000" "0|1:135,0:0.000:0.000" "0|1:173,5:0.028:0.000" "0|1:134,1:0.007:0.000"
3 63329922 . T C . PASS . GT:AD:AF:CF "0|1:128,1:0.008:0.000" "0|1:112,0:0.000:0.000" "0|1:235,0:0.000:0.000" "0|1:107,17:0.137:0.299" "0|1:128,1:0.008:0.000" "0|1:124,1:0.008:0.000"
3 69358696 . T C . PASS . GT:AD:AF:CF "0|1:152,8:0.050:0.097" "0|1:133,1:0.007:0.000" "0|1:134,0:0.000:0.000" "0|1:106,0:0.000:0.000" "0|1:98,0:0.000:0.000" "0|1:138,1:0.007:0.000"
3 72196138 . T C . PASS . GT:AD:AF:CF "1|0:87,52:0.374:1.000" "1|0:83,0:0.000:0.000" "1|0:118,1:0.008:0.000" "1|0:105,1:0.009:0.000" "1|0:127,2:0.016:0.000" "1|0:186,0:0.000:0.000"
3 86486819 . T C . PASS . GT:AD:AF:CF "1|0:198,1:0.005:0.000" "1|0:158,1:0.006:0.000" "1|0:93,66:0.415:1.000" "1|0:163,1:0.006:0.000" "1|0:133,0:0.000:0.000" "1|0:125,0:0.000:0.000"
3 99757179 . T C . PASS . GT:AD:AF:CF "1|0:129,0:0.000:0.000" "1|0:133,41:0.236:0.782" "1|0:188,1:0.005:0.000" "1|0:190,2:0.010:0.000" "1|0:191,0:0.000:0.000" "1|0:142,2:0.014:0.000"
3 148471228 . T C . PASS . GT:AD:AF:CF "1|0:136,0:0.000:0.000" "1|0:91,48:0.345:1.000" "1|0:138,3:0.021:0.000" "1|0:122,0:0.000:0.000" "1|0:120,2:0.016:0.000" "1|0:115,0:0.000:0.000"
3 151005318 . T C . PASS . GT:AD:AF:CF "0|1:81,59:0.421:1.000" "0|1:107,61:0.363:1.000" "0|1:119,68:0.364:1.000" "0|1:72,55:0.433:1.000" "0|1:88,68:0.436:1.000" "0|1:118,59:0.333:1.000"
3 159823860 . T C . PASS . GT:AD:AF:CF "1|0:148,1:0.007:0.000" "1|0:192,3:0.015:0.000" "1|0:153,0:0.000:0.000" "1|0:147,15:0.093:0.215" "1|0:185,0:0.000:0.000" "1|0:135,0:0.000:0.000"
3 188459553 . T C . PASS . GT:AD:AF:CF "0|1:122,0:0.000:0.000" "0|1:158,2:0.013:0.000" "0|1:170,0:0.000:0.000" "0|1:82,45:0.354:1.000" "0|1:194,1:0.005:0.000" "0|1:81,1:0.012:0.000"
3 194050209 . T C . PASS . GT:AD:AF:CF "1|0:90,1:0.011:0.000" "1|0:156,1:0.006:0.000" "1|0:166,1:0.006:0.000" "1|0:211,0:0.000:0.000" "1|0:105,6:0.054:0.050" "1|0:163,1:0.006:0.000"
4 4942269 . T C . PASS . GT:AD:AF:CF "1|0:86,45:0.344:1.000" "1|0:206,0:0.000:0.000" "1|0:103,69:0.401:1.000" "1|0:158,2:0.013:0.000" "1|0:132,0:0.000:0.000" "1|0:106,3:0.028:0.000"
4 16368941 . T C . PASS . GT:AD:AF:CF "0|1:98,0:0.000:0.000" "0|1:130,0:0.000:0.000" "0|1:148,0:0.000:0.000" "0|1:143,1:0.007:0.000" "0|1:119,2:0.017:0.000" "0|1:89,41:0.315:1.000"
4 24447411 . T C . PASS . GT:AD:AF:CF "0|1:169,2:0.012:0.000" "0|1:130,1:0.008:0.000" "0|1:207,2:0.010:0.000" "0|1:111,56:0.335:1.000" "0|1:147,0:0.000:0.000" "0|1:204,1:0.005:0.000"
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7 28149169 . T C . PASS . GT:AD:AF:CF "1|0:85,69:0.448:1.000" "1|0:70,48:0.407:1.000" "1|0:117,58:0.331:1.000" "1|0:106,55:0.342:1.000" "1|0:116,58:0.333:1.000" "1|0:95,60:0.387:1.000"
7 36696385 . T C . PASS . GT:AD:AF:CF "1|0:95,39:0.291:1.000" "1|0:85,65:0.433:1.000" "1|0:125,36:0.224:1.000" "1|0:98,68:0.410:1.000" "1|0:87,57:0.396:1.000" "1|0:80,33:0.292:1.000"
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7 50430098 . T C . PASS . GT:AD:AF:CF "0|1:129,1:0.008:0.000" "0|1:147,1:0.007:0.000" "0|1:137,0:0.000:0.000" "0|1:162,1:0.006:0.000" "0|1:88,51:0.367:1.000" "0|1:180,0:0.000:0.000"
7 52635798 . T C . PASS . GT:AD:AF:CF "0|1:126,0:0.000:0.000" "0|1:189,2:0.010:0.000" "0|1:158,0:0.000:0.000" "0|1:109,53:0.327:1.000" "0|1:134,0:0.000:0.000" "0|1:121,0:0.000:0.000"
7 55696228 . T C . PASS . GT:AD:AF:CF "1|0:97,0:0.000:0.000" "1|0:143,0:0.000:0.000" "1|0:72,46:0.390:1.000" "1|0:175,1:0.006:0.000" "1|0:138,0:0.000:0.000" "1|0:183,0:0.000:0.000"
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7 61086003 . T C . PASS . GT:AD:AF:CF "0|1:115,0:0.000:0.000" "0|1:141,1:0.007:0.000" "0|1:104,42:0.288:1.000" "0|1:196,0:0.000:0.000" "0|1:142,1:0.007:0.000" "0|1:194,0:0.000:0.000"
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7 77013697 . T C . PASS . GT:AD:AF:CF "0|1:174,0:0.000:0.000" "0|1:119,0:0.000:0.000" "0|1:99,50:0.336:1.000" "0|1:138,1:0.007:0.000" "0|1:106,1:0.009:0.000" "0|1:138,2:0.014:0.000"
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7 104832082 . T C . PASS . GT:AD:AF:CF "0|1:159,0:0.000:0.000" "0|1:137,58:0.297:1.000" "0|1:117,0:0.000:0.000" "0|1:141,2:0.014:0.000" "0|1:171,1:0.006:0.000" "0|1:149,0:0.000:0.000"
7 108216904 . T C . PASS . GT:AD:AF:CF "1|0:85,0:0.000:0.000" "1|0:115,2:0.017:0.000" "1|0:144,0:0.000:0.000" "1|0:115,0:0.000:0.000" "1|0:106,2:0.019:0.000" "1|0:107,51:0.323:1.000"
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8 33249840 . T C . PASS . GT:AD:AF:CF "1|0:97,52:0.349:1.000" "1|0:80,34:0.298:1.000" "1|0:156,91:0.368:1.000" "1|0:73,32:0.305:1.000" "1|0:55,36:0.396:1.000" "1|0:76,37:0.327:1.000"
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8 48706659 . T C . PASS . GT:AD:AF:CF "0|1:128,0:0.000:0.000" "0|1:201,1:0.005:0.000" "0|1:123,3:0.024:0.000" "0|1:72,46:0.390:1.000" "0|1:161,1:0.006:0.000" "0|1:128,1:0.008:0.000"
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8 131298828 . T C . PASS . GT:AD:AF:CF "0|1:136,1:0.007:0.000" "0|1:101,58:0.365:1.000" "0|1:123,2:0.016:0.000" "0|1:168,0:0.000:0.000" "0|1:164,0:0.000:0.000" "0|1:173,0:0.000:0.000"
8 141937288 . T C . PASS . GT:AD:AF:CF "0|1:141,0:0.000:0.000" "0|1:86,35:0.289:1.000" "0|1:155,0:0.000:0.000" "0|1:203,3:0.015:0.000" "0|1:146,0:0.000:0.000" "0|1:112,0:0.000:0.000"
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9 16866051 . T C . PASS . GT:AD:AF:CF "1|0:89,42:0.321:1.000" "1|0:73,59:0.447:1.000" "1|0:97,48:0.331:1.000" "1|0:81,38:0.319:1.000" "1|0:110,42:0.276:1.000" "1|0:123,77:0.385:1.000"
9 21521613 . T C . PASS . GT:AD:AF:CF "1|0:208,0:0.000:0.000" "1|0:144,1:0.007:0.000" "1|0:152,1:0.007:0.000" "1|0:91,62:0.405:1.000" "1|0:177,1:0.006:0.000" "1|0:146,2:0.014:0.000"
9 38394256 . T C . PASS . GT:AD:AF:CF "0|1:96,17:0.150:0.546" "0|1:113,0:0.000:0.000" "0|1:127,0:0.000:0.000" "0|1:141,1:0.007:0.000" "0|1:139,0:0.000:0.000" "0|1:102,0:0.000:0.000"
9 55573648 . T C . PASS . GT:AD:AF:CF "0|1:53,34:0.391:1.000" "0|1:88,46:0.343:1.000" "0|1:108,56:0.341:1.000" "0|1:83,31:0.272:1.000" "0|1:105,48:0.314:1.000" "0|1:107,54:0.335:1.000"
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9 65816737 . T C . PASS . GT:AD:AF:CF "0|1:140,0:0.000:0.000" "0|1:167,12:0.067:0.094" "0|1:112,1:0.009:0.000" "0|1:151,0:0.000:0.000" "0|1:98,0:0.000:0.000" "0|1:159,0:0.000:0.000"
9 66288146 . T C . PASS . GT:AD:AF:CF "1|0:107,0:0.000:0.000" "1|0:85,40:0.320:1.000" "1|0:229,2:0.009:0.000" "1|0:137,0:0.000:0.000" "1|0:95,1:0.010:0.000" "1|0:76,0:0.000:0.000"
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9 126200155 . T C . PASS . GT:AD:AF:CF "1|0:137,69:0.335:1.000" "1|0:122,0:0.000:0.000" "1|0:114,1:0.009:0.000" "1|0:133,0:0.000:0.000" "1|0:118,0:0.000:0.000" "1|0:148,0:0.000:0.000"
10 25278769 . T C . PASS . GT:AD:AF:CF "0|1:93,57:0.380:1.000" "0|1:133,84:0.387:1.000" "0|1:93,60:0.392:1.000" "0|1:104,65:0.385:1.000" "0|1:98,45:0.315:1.000" "0|1:91,47:0.341:1.000"
10 29194792 . T C . PASS . GT:AD:AF:CF "0|1:134,1:0.007:0.000" "0|1:102,39:0.277:1.000" "0|1:123,1:0.008:0.000" "0|1:151,1:0.007:0.000" "0|1:145,1:0.007:0.000" "0|1:117,1:0.008:0.000"
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10 44378619 . T C . PASS . GT:AD:AF:CF "1|0:84,49:0.368:1.000" "1|0:130,68:0.343:1.000" "1|0:92,39:0.298:1.000" "1|0:98,61:0.384:1.000" "1|0:92,53:0.366:1.000" "1|0:105,55:0.344:1.000"
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10 60054296 . T C . PASS . GT:AD:AF:CF "0|1:118,1:0.008:0.000" "0|1:137,0:0.000:0.000" "0|1:214,2:0.009:0.000" "0|1:170,1:0.006:0.000" "0|1:77,50:0.394:1.000" "0|1:161,1:0.006:0.000"
10 71118156 . T C . PASS . GT:AD:AF:CF "1|0:192,1:0.005:0.000" "1|0:59,32:0.352:1.000" "1|0:188,1:0.005:0.000" "1|0:180,0:0.000:0.000" "1|0:150,2:0.013:0.000" "1|0:178,3:0.017:0.000"
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15 76872474 . T C . PASS . GT:AD:AF:CF "1|0:255,3:0.012:0.000" "1|0:139,0:0.000:0.000" "1|0:148,81:0.354:1.000" "1|0:164,0:0.000:0.000" "1|0:109,1:0.009:0.000" "1|0:167,0:0.000:0.000"
15 78841206 . T C . PASS . GT:AD:AF:CF "0|1:172,0:0.000:0.000" "0|1:212,0:0.000:0.000" "0|1:135,2:0.015:0.000" "0|1:167,1:0.006:0.000" "0|1:194,2:0.010:0.000" "0|1:99,37:0.272:1.000"
15 79839287 . T C . PASS . GT:AD:AF:CF "0|1:271,1:0.004:0.000" "0|1:157,0:0.000:0.000" "0|1:157,0:0.000:0.000" "0|1:79,59:0.428:1.000" "0|1:161,0:0.000:0.000" "0|1:134,2:0.015:0.000"
15 82268175 . T C . PASS . GT:AD:AF:CF "0|1:115,66:0.365:1.000" "0|1:80,40:0.333:1.000" "0|1:110,47:0.299:1.000" "0|1:58,19:0.247:1.000" "0|1:64,37:0.366:1.000" "0|1:110,60:0.353:1.000"
15 84070515 . T C . PASS . GT:AD:AF:CF "1|0:131,0:0.000:0.000" "1|0:94,49:0.343:1.000" "1|0:161,1:0.006:0.000" "1|0:110,0:0.000:0.000" "1|0:103,1:0.010:0.000" "1|0:182,0:0.000:0.000"
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15 94670091 . T C . PASS . GT:AD:AF:CF "1|0:135,0:0.000:0.000" "1|0:82,34:0.293:1.000" "1|0:168,0:0.000:0.000" "1|0:123,1:0.008:0.000" "1|0:107,0:0.000:0.000" "1|0:171,1:0.006:0.000"
15 97254850 . T C . PASS . GT:AD:AF:CF "1|0:118,1:0.008:0.000" "1|0:129,0:0.000:0.000" "1|0:94,39:0.293:1.000" "1|0:137,1:0.007:0.000" "1|0:171,2:0.012:0.000" "1|0:127,1:0.008:0.000"
15 104015905 . T C . PASS . GT:AD:AF:CF "0|1:98,60:0.380:1.000" "0|1:113,2:0.017:0.000" "0|1:66,57:0.463:1.000" "0|1:137,0:0.000:0.000" "0|1:178,1:0.006:0.000" "0|1:71,45:0.388:1.000"
15 107086854 . T C . PASS . GT:AD:AF:CF "0|1:210,2:0.009:0.000" "0|1:159,34:0.176:0.544" "0|1:93,0:0.000:0.000" "0|1:97,0:0.000:0.000" "0|1:129,2:0.015:0.000" "0|1:198,0:0.000:0.000"
16 2892306 . T C . PASS . GT:AD:AF:CF "1|0:127,0:0.000:0.000" "1|0:185,0:0.000:0.000" "1|0:169,0:0.000:0.000" "1|0:146,1:0.007:0.000" "1|0:59,42:0.416:1.000" "1|0:191,1:0.005:0.000"
16 16180644 . T C . PASS . GT:AD:AF:CF "1|0:113,66:0.369:1.000" "1|0:139,1:0.007:0.000" "1|0:176,0:0.000:0.000" "1|0:131,0:0.000:0.000" "1|0:139,1:0.007:0.000" "1|0:118,2:0.017:0.000"
16 23550536 . T C . PASS . GT:AD:AF:CF "1|0:161,0:0.000:0.000" "1|0:153,0:0.000:0.000" "1|0:117,0:0.000:0.000" "1|0:165,0:0.000:0.000" "1|0:124,19:0.133:0.364" "1|0:194,0:0.000:0.000"
16 35639976 . T C . PASS . GT:AD:AF:CF "0|1:177,0:0.000:0.000" "0|1:90,66:0.423:1.000" "0|1:136,1:0.007:0.000" "0|1:119,1:0.008:0.000" "0|1:162,1:0.006:0.000" "0|1:120,0:0.000:0.000"
16 36833347 . T C . PASS . GT:AD:AF:CF "1|0:167,1:0.006:0.000" "1|0:157,0:0.000:0.000" "1|0:140,85:0.378:1.000" "1|0:182,1:0.005:0.000" "1|0:154,0:0.000:0.000" "1|0:140,1:0.007:0.000"
16 52337373 . T C . PASS . GT:AD:AF:CF "1|0:78,35:0.310:1.000" "1|0:86,45:0.344:1.000" "1|0:58,34:0.370:1.000" "1|0:96,43:0.309:1.000" "1|0:98,44:0.310:1.000" "1|0:86,54:0.386:1.000"
16 53835028 . T C . PASS . GT:AD:AF:CF "1|0:77,43:0.358:1.000" "1|0:121,2:0.016:0.000" "1|0:110,1:0.009:0.000" "1|0:137,1:0.007:0.000" "1|0:146,0:0.000:0.000" "1|0:151,1:0.007:0.000"
16 53875178 . T C . PASS . GT:AD:AF:CF "1|0:80,47:0.370:1.000" "1|0:132,2:0.015:0.000" "1|0:170,0:0.000:0.000" "1|0:153,2:0.013:0.000" "1|0:180,2:0.011:0.000" "1|0:206,2:0.010:0.000"
16 65466044 . T C . PASS . GT:AD:AF:CF "1|0:106,58:0.354:1.000" "1|0:91,0:0.000:0.000" "1|0:117,55:0.320:1.000" "1|0:124,0:0.000:0.000" "1|0:168,2:0.012:0.000" "1|0:182,2:0.011:0.000"
16 66277426 . T C . PASS . GT:AD:AF:CF "1|0:93,69:0.426:1.000" "1|0:96,55:0.364:1.000" "1|0:119,56:0.320:1.000" "1|0:130,87:0.401:1.000" "1|0:77,33:0.300:1.000" "1|0:91,36:0.283:1.000"
16 68738207 . T C . PASS . GT:AD:AF:CF "0|1:194,0:0.000:0.000" "0|1:106,0:0.000:0.000" "0|1:90,1:0.011:0.000" "0|1:137,46:0.251:0.619" "0|1:150,2:0.013:0.000" "0|1:147,3:0.020:0.000"
17 9426579 . T C . PASS . GT:AD:AF:CF "1|0:85,39:0.315:1.000" "1|0:157,71:0.311:1.000" "1|0:83,38:0.314:1.000" "1|0:93,42:0.311:1.000" "1|0:77,40:0.342:1.000" "1|0:79,54:0.406:1.000"
17 37775832 . T C . PASS . GT:AD:AF:CF "1|0:188,2:0.011:0.000" "1|0:143,0:0.000:0.000" "1|0:220,2:0.009:0.000" "1|0:118,0:0.000:0.000" "1|0:114,0:0.000:0.000" "1|0:149,63:0.297:1.000"
17 47889483 . T C . PASS . GT:AD:AF:CF "1|0:125,0:0.000:0.000" "1|0:173,1:0.006:0.000" "1|0:108,1:0.009:0.000" "1|0:219,3:0.014:0.000" "1|0:120,9:0.070:0.237" "1|0:159,2:0.012:0.000"
17 50607409 . T C . PASS . GT:AD:AF:CF "0|1:130,18:0.122:0.387" "0|1:161,1:0.006:0.000" "0|1:118,0:0.000:0.000" "0|1:154,1:0.006:0.000" "0|1:267,1:0.004:0.000" "0|1:130,0:0.000:0.000"
17 52003058 . T C . PASS . GT:AD:AF:CF "0|1:101,61:0.377:1.000" "0|1:154,62:0.287:1.000" "0|1:76,22:0.224:1.000" "0|1:81,54:0.400:1.000" "0|1:113,51:0.311:1.000" "0|1:79,44:0.358:1.000"
17 52729681 . T C . PASS . GT:AD:AF:CF "1|0:65,1:0.015:0.000" "1|0:141,0:0.000:0.000" "1|0:98,54:0.355:1.000" "1|0:137,0:0.000:0.000" "1|0:156,0:0.000:0.000" "1|0:117,1:0.008:0.000"
17 84878702 . T C . PASS . GT:AD:AF:CF "1|0:154,0:0.000:0.000" "1|0:125,1:0.008:0.000" "1|0:159,1:0.006:0.000" "1|0:160,9:0.053:0.139" "1|0:122,1:0.008:0.000" "1|0:152,0:0.000:0.000"
17 89582004 . T C . PASS . GT:AD:AF:CF "0|1:114,1:0.009:0.000" "0|1:133,0:0.000:0.000" "0|1:166,0:0.000:0.000" "0|1:215,2:0.009:0.000" "0|1:152,1:0.007:0.000" "0|1:81,54:0.400:1.000"
18 8272293 . T C . PASS . GT:AD:AF:CF "0|1:155,1:0.006:0.000" "0|1:59,39:0.398:1.000" "0|1:160,0:0.000:0.000" "0|1:255,4:0.015:0.000" "0|1:130,0:0.000:0.000" "0|1:177,2:0.011:0.000"
18 11848609 . T C . PASS . GT:AD:AF:CF "0|1:92,53:0.366:1.000" "0|1:212,0:0.000:0.000" "0|1:156,0:0.000:0.000" "0|1:129,2:0.015:0.000" "0|1:164,1:0.006:0.000" "0|1:188,0:0.000:0.000"
18 23308373 . T C . PASS . GT:AD:AF:CF "1|0:168,3:0.018:0.000" "1|0:134,1:0.007:0.000" "1|0:145,27:0.157:0.465" "1|0:221,3:0.013:0.000" "1|0:103,1:0.010:0.000" "1|0:130,1:0.008:0.000"
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18 66699630 . T C . PASS . GT:AD:AF:CF "0|1:118,2:0.017:0.000" "0|1:153,1:0.006:0.000" "0|1:183,0:0.000:0.000" "0|1:139,0:0.000:0.000" "0|1:76,37:0.327:1.000" "0|1:115,1:0.009:0.000"
19 16683613 . T C . PASS . GT:AD:AF:CF "1|0:119,87:0.422:1.000" "1|0:92,46:0.333:1.000" "1|0:89,51:0.364:1.000" "1|0:115,55:0.324:1.000" "1|0:70,53:0.431:1.000" "1|0:100,62:0.383:1.000"
19 30116569 . T C . PASS . GT:AD:AF:CF "1|0:125,0:0.000:0.000" "1|0:152,0:0.000:0.000" "1|0:177,1:0.006:0.000" "1|0:76,61:0.445:1.000" "1|0:156,0:0.000:0.000" "1|0:218,1:0.005:0.000"
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19 48017589 . T C . PASS . GT:AD:AF:CF "1|0:120,2:0.016:0.000" "1|0:155,1:0.006:0.000" "1|0:154,1:0.006:0.000" "1|0:90,54:0.375:1.000" "1|0:115,55:0.324:1.000" "1|0:130,2:0.015:0.000"
19 56404806 . T C . PASS . GT:AD:AF:CF "1|0:86,57:0.399:1.000" "1|0:110,60:0.353:1.000" "1|0:128,67:0.344:1.000" "1|0:75,47:0.385:1.000" "1|0:128,72:0.360:1.000" "1|0:147,56:0.276:1.000"
19 69320144 . T C . PASS . GT:AD:AF:CF "1|0:147,1:0.007:0.000" "1|0:123,1:0.008:0.000" "1|0:119,0:0.000:0.000" "1|0:157,1:0.006:0.000" "1|0:73,53:0.421:1.000" "1|0:210,2:0.009:0.000"
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20 8890585 . T C . PASS . GT:AD:AF:CF "1|0:166,2:0.012:0.000" "1|0:145,1:0.007:0.000" "1|0:101,0:0.000:0.000" "1|0:188,1:0.005:0.000" "1|0:194,0:0.000:0.000" "1|0:86,44:0.338:1.000"
20 37146354 . T C . PASS . GT:AD:AF:CF "1|0:168,0:0.000:0.000" "1|0:101,2:0.019:0.000" "1|0:130,0:0.000:0.000" "1|0:148,0:0.000:0.000" "1|0:85,9:0.096:0.436" "1|0:106,0:0.000:0.000"
20 37265605 . T C . PASS . GT:AD:AF:CF "1|0:130,11:0.078:0.116" "1|0:130,0:0.000:0.000" "1|0:140,0:0.000:0.000" "1|0:116,0:0.000:0.000" "1|0:134,0:0.000:0.000" "1|0:144,0:0.000:0.000"
20 41583724 . T C . PASS . GT:AD:AF:CF "1|0:108,2:0.018:0.000" "1|0:145,3:0.020:0.000" "1|0:111,0:0.000:0.000" "1|0:113,3:0.026:0.000" "1|0:155,11:0.066:0.128" "1|0:156,1:0.006:0.000"
20 53935768 . T C . PASS . GT:AD:AF:CF "0|1:171,1:0.006:0.000" "0|1:160,2:0.012:0.000" "0|1:114,23:0.168:0.356" "0|1:183,1:0.005:0.000" "0|1:162,1:0.006:0.000" "0|1:110,0:0.000:0.000"
20 57182564 . T C . PASS . GT:AD:AF:CF "0|1:125,1:0.008:0.000" "0|1:124,0:0.000:0.000" "0|1:154,1:0.006:0.000" "0|1:119,49:0.292:1.000" "0|1:165,0:0.000:0.000" "0|1:177,1:0.006:0.000"
20 62725480 . T C . PASS . GT:AD:AF:CF "1|0:178,2:0.011:0.000" "1|0:99,55:0.357:1.000" "1|0:153,4:0.025:0.000" "1|0:147,0:0.000:0.000" "1|0:159,1:0.006:0.000" "1|0:149,1:0.007:0.000"
21 9129285 . T C . PASS . GT:AD:AF:CF "0|1:217,1:0.005:0.000" "0|1:209,1:0.005:0.000" "0|1:142,2:0.014:0.000" "0|1:135,0:0.000:0.000" "0|1:92,1:0.011:0.000" "0|1:170,11:0.061:0.144"
21 13004626 . T C . PASS . GT:AD:AF:CF "1|0:103,32:0.237:0.676" "1|0:166,3:0.018:0.000" "1|0:141,1:0.007:0.000" "1|0:145,0:0.000:0.000" "1|0:125,1:0.008:0.000" "1|0:142,0:0.000:0.000"
21 13880195 . T C . PASS . GT:AD:AF:CF "0|1:103,56:0.352:1.000" "0|1:75,32:0.299:1.000" "0|1:86,42:0.328:1.000" "0|1:73,41:0.360:1.000" "0|1:121,54:0.309:1.000" "0|1:111,66:0.373:1.000"
21 17749210 . T C . PASS . GT:AD:AF:CF "0|1:167,1:0.006:0.000" "0|1:112,60:0.349:1.000" "0|1:125,1:0.008:0.000" "0|1:187,2:0.011:0.000" "0|1:128,2:0.015:0.000" "0|1:177,0:0.000:0.000"
21 20627801 . T C . PASS . GT:AD:AF:CF "1|0:101,46:0.313:1.000" "1|0:176,0:0.000:0.000" "1|0:104,0:0.000:0.000" "1|0:117,1:0.008:0.000" "1|0:116,1:0.009:0.000" "1|0:203,0:0.000:0.000"
21 36456752 . T C . PASS . GT:AD:AF:CF "0|1:153,0:0.000:0.000" "0|1:133,8:0.057:0.059" "0|1:121,1:0.008:0.000" "0|1:196,1:0.005:0.000" "0|1:137,0:0.000:0.000" "0|1:92,1:0.011:0.000"
21 37670231 . T C . PASS . GT:AD:AF:CF "1|0:178,0:0.000:0.000" "1|0:155,2:0.013:0.000" "1|0:101,4:0.038:0.000" "1|0:107,0:0.000:0.000" "1|0:119,8:0.063:0.181" "1|0:206,0:0.000:0.000"
21 39848566 . T C . PASS . GT:AD:AF:CF "1|0:99,60:0.377:1.000" "1|0:74,33:0.308:1.000" "1|0:77,54:0.412:1.000" "1|0:111,1:0.009:0.000" "1|0:117,1:0.008:0.000" "1|0:105,42:0.286:1.000"
22 9743782 . T C . PASS . GT:AD:AF:CF "1|0:199,0:0.000:0.000" "1|0:70,41:0.369:1.000" "1|0:105,0:0.000:0.000" "1|0:136,2:0.014:0.000" "1|0:122,0:0.000:0.000" "1|0:153,0:0.000:0.000"
22 9889332 . T C . PASS . GT:AD:AF:CF "1|0:108,0:0.000:0.000" "1|0:164,0:0.000:0.000" "1|0:161,1:0.006:0.000" "1|0:94,57:0.377:1.000" "1|0:153,1:0.006:0.000" "1|0:136,3:0.022:0.000"
22 25225036 . T C . PASS . GT:AD:AF:CF "0|1:156,1:0.006:0.000" "0|1:262,2:0.008:0.000" "0|1:145,1:0.007:0.000" "0|1:92,50:0.352:1.000" "0|1:220,0:0.000:0.000" "0|1:141,0:0.000:0.000"
22 33585553 . T C . PASS . GT:AD:AF:CF "1|0:96,56:0.368:1.000" "1|0:180,2:0.011:0.000" "1|0:78,42:0.350:1.000" "1|0:125,0:0.000:0.000" "1|0:96,1:0.010:0.000" "1|0:135,0:0.000:0.000"
22 38041365 . T C . PASS . GT:AD:AF:CF "1|0:120,0:0.000:0.000" "1|0:153,2:0.013:0.000" "1|0:168,1:0.006:0.000" "1|0:93,44:0.321:1.000" "1|0:193,0:0.000:0.000" "1|0:142,0:0.000:0.000"
22 47013781 . T C . PASS . GT:AD:AF:CF "0|1:93,39:0.295:1.000" "0|1:169,0:0.000:0.000" "0|1:174,2:0.011:0.000" "0|1:179,0:0.000:0.000" "0|1:148,2:0.013:0.000" "0|1:113,0:0.000:0.000"
22 55695229 . T C . PASS . GT:AD:AF:CF "0|1:139,0:0.000:0.000" "0|1:175,0:0.000:0.000" "0|1:143,0:0.000:0.000" "0|1:94,55:0.369:1.000" "0|1:213,1:0.005:0.000" "0|1:114,0:0.000:0.000"
#TruelyPresentSNVs . . . . . . . . 116 103 111 106 113 104
#TruelyPresentCNVs . . . . . . . . 0 0 0 0 0 0