refactor: improve execution tool guidance for script execution

This commit refactors MCP app detection and enhances the tool feedback loop to guide
clients toward the correct execution tools.

Key changes:
* Extracted `_use_mcp_app_for_client` from `server.py` into a public
  `use_mcp_app_for_client` utility in `mcp_app.py` for cross-module reuse.
* Added a `_pick_execution_tool` helper in `run_script.py` to dynamically determine
  the right tool (`run_script`, `run_script_interactive`, or
  `run_script_with_confirmation`) based on script flag (needs_confirmation) and
  client capabilities.
* Updated `validate_script` to explicitly instruct the client on which execution tool
  to use next in its text response.
* Improved the error message in `run_script` to dynamically suggest the appropriate
  confirmation tool if the script requires confirmation but was called incorrectly.

Author: Jazzcort

src/linux_mcp_server/mcp_app.py

@@ -1,3 +1,57 @@
+from fastmcp.server.dependencies import get_context
+from mcp.types import InitializeRequestParams
+
+from linux_mcp_server.config import CONFIG
+
+
 RUN_SCRIPT_APP_URI = "ui://run_script_readonly_with_mcp_app/run-script-app.html"
 MCP_APP_MIME_TYPE = "text/html;profile=mcp-app"
 MCP_UI_EXTENSION = "io.modelcontextprotocol/ui"
+
+
+def use_mcp_app_for_client(client_params: InitializeRequestParams | None = None):
+    if client_params is None:
+        client_params = get_context().session.client_params
+
+    assert client_params is not None, (
+        "FastMCP framework error: client_params should not be None after `initialize` is done"
+    )
+    # The configuration can overwrite the MCP app support detection, so we have the flexibility to
+    # manually turn the Mcp app feature on/off for developing/testing purposes.
+    if CONFIG.use_mcp_apps is not None:
+        return CONFIG.use_mcp_apps
+
+    # For python-sdk -1.x, count on extensibility of protocol types - while this is being
+    # removed for v2, hopefully extensions will be there properly.
+    capabilities = client_params.capabilities
+    extensions = getattr(capabilities, "extensions", {})
+    mcp_ui_extension = extensions.get(MCP_UI_EXTENSION) or {}
+    mime_types = mcp_ui_extension.get("mimeTypes") or []
+
+    # The configuration can overwrite the MCP app support detection, so we have the flexibility to
+    # manually turn the Mcp app feature on/off for developing/testing purposes.
+    return MCP_APP_MIME_TYPE in mime_types
+
+
+def hide_app_tools_for_client(client_params: InitializeRequestParams | None = None):
+    # Versions of goose before 1.29.0 don't understand _meta.ui.visiblity, so would
+    # leak our app-only tools to the model. However, they also are happy to let the
+    # model call tools that aren't listed as well. So if we see such an old version
+    # of goose, we strip out the app-only tools.
+    if client_params is None:
+        client_params = get_context().session.client_params
+
+    assert client_params is not None, (
+        "FastMCP framework error: client_params should not be None after `initialize` is done"
+    )
+
+    client_info = getattr(client_params, "clientInfo", None)
+    if client_info and client_info.name and client_info.name.startswith("goose"):
+        try:
+            major, minor = client_info.version.split(".")[0:2]
+            if (int(major), int(minor)) < (1, 29):
+                return True
+        except ValueError:
+            return False
+
+    return False

src/linux_mcp_server/server.py

@@ -18,7 +18,6 @@
 from fastmcp.server.middleware.middleware import CallNext
 from fastmcp.utilities.components import FastMCPComponent
 from mcp.types import InitializeRequest
-from mcp.types import InitializeRequestParams
 from mcp.types import InitializeResult
 
 import linux_mcp_server
@@ -29,9 +28,10 @@
 from linux_mcp_server.config import CONFIG
 from linux_mcp_server.config import Toolset
 from linux_mcp_server.config import Transport
+from linux_mcp_server.mcp_app import hide_app_tools_for_client
 from linux_mcp_server.mcp_app import MCP_APP_MIME_TYPE
-from linux_mcp_server.mcp_app import MCP_UI_EXTENSION
 from linux_mcp_server.mcp_app import RUN_SCRIPT_APP_URI
+from linux_mcp_server.mcp_app import use_mcp_app_for_client
 from linux_mcp_server.toolset import get_toolset
 from linux_mcp_server.toolset import Toolset as ToolsetInfo
 
@@ -227,41 +227,6 @@ def run_script_app_html() -> ResourceResult:
 from linux_mcp_server.tools import *  # noqa: E402, F403
 
 
-def _use_mcp_app_for_client(client_params: InitializeRequestParams):
-    # The configuration can overwrite the MCP app support detection, so we have the flexibility to
-    # manually turn the Mcp app feature on/off for developing/testing purposes.
-    if CONFIG.use_mcp_apps is not None:
-        return CONFIG.use_mcp_apps
-
-    # For python-sdk -1.x, count on extensibility of protocol types - while this is being
-    # removed for v2, hopefully extensions will be there properly.
-    capabilities = client_params.capabilities
-    extensions = getattr(capabilities, "extensions", {})
-    mcp_ui_extension = extensions.get(MCP_UI_EXTENSION) or {}
-    mime_types = mcp_ui_extension.get("mimeTypes") or []
-
-    # The configuration can overwrite the MCP app support detection, so we have the flexibility to
-    # manually turn the Mcp app feature on/off for developing/testing purposes.
-    return MCP_APP_MIME_TYPE in mime_types
-
-
-def _hide_app_tools_for_client(client_params: InitializeRequestParams):
-    # Versions of goose before 1.29.0 don't understand _meta.ui.visiblity, so would
-    # leak our app-only tools to the model. However, they also are happy to let the
-    # model call tools that aren't listed as well. So if we see such an old version
-    # of goose, we strip out the app-only tools.
-    client_info = getattr(client_params, "clientInfo", None)
-    if client_info and client_info.name and client_info.name.startswith("goose"):
-        try:
-            major, minor = client_info.version.split(".")[0:2]
-            if (int(major), int(minor)) < (1, 29):
-                return True
-        except ValueError:
-            return False
-
-    return False
-
-
 @dataclass
 class ComponentFilter:
     """
@@ -291,10 +256,8 @@ def includes(self, component: FastMCPComponent):
 
     @staticmethod
     def get(context: Context, *, is_list_tools=False):
-        client_params = context.session.client_params
-        assert client_params is not None
-        mcp_apps = _use_mcp_app_for_client(client_params)
-        hide_app_tools = mcp_apps and is_list_tools and _hide_app_tools_for_client(client_params)
+        mcp_apps = use_mcp_app_for_client()
+        hide_app_tools = mcp_apps and is_list_tools and hide_app_tools_for_client()
 
         return ComponentFilter(
             mcp_apps=mcp_apps,
@@ -401,7 +364,7 @@ async def on_initialize(
         instructions = _get_instructions()
 
         toolset = _current_toolset()
-        if "run_script" in toolset.tags and _use_mcp_app_for_client(context.message.params):
+        if "run_script" in toolset.tags and use_mcp_app_for_client(context.message.params):
             instructions = instructions.replace("run_script_with_confirmation", "run_script_interactive")
 
         session._init_options.instructions = instructions

src/linux_mcp_server/tools/run_script.py

@@ -24,6 +24,7 @@
 from linux_mcp_server.gatekeeper import check_run_script
 from linux_mcp_server.gatekeeper import GatekeeperStatus
 from linux_mcp_server.mcp_app import RUN_SCRIPT_APP_URI
+from linux_mcp_server.mcp_app import use_mcp_app_for_client
 from linux_mcp_server.server import mcp
 from linux_mcp_server.utils.decorators import disallow_local_execution_in_containers
 from linux_mcp_server.utils.types import Host
@@ -369,6 +370,15 @@ async def get_execution_state(id: str):
     return {"state": script_detail.state}
 
 
+def _pick_execution_tool(needs_confirmation: bool):
+    if not needs_confirmation:
+        return "run_script"
+    elif use_mcp_app_for_client():
+        return "run_script_interactive"
+    else:
+        return "run_script_with_confirmation"
+
+
 @mcp.tool(
     tags={"run_script"},
     title="Validate a script",
@@ -411,7 +421,12 @@ async def validate_script(
         raise ToolError(gatekeeper_result.description)
 
     result = ToolResult(
-        content=[TextContent(type="text", text=f"Script passed gatekeeper validation and is stored with ID {id}")],
+        content=[
+            TextContent(
+                type="text",
+                text=f"Script passed gatekeeper validation and is stored with ID {id}. Please use {_pick_execution_tool(script_details.needs_confirmation)} to execute the validated script.",
+            )
+        ],
         structured_content={
             "token": id,
             "needs_confirmation": script_details.needs_confirmation,
@@ -436,7 +451,7 @@ async def run_script(
 
     # Verify that this script doesn't require confirmation
     if script_details.needs_confirmation:
-        raise ToolError("This script requires confirmation. Use run_script_with_confirmation instead of run_script.")
+        raise ToolError(f"This script requires confirmation. Use {_pick_execution_tool(True)} instead of run_script.")
 
     script_store.set_script_state(token, "executing")
     try: