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fix: Resolve CI errors - update version assertion and add MCP compliance test
- Fix version assertion in tests/test_v0_8_basic.py from 0.8.0 to 0.8.2 - Add missing test_mcp_compliance.py required by CI pipeline - Implement async MCP protocol compliance tests for server startup, tools listing, protocol messages, and error handling 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <noreply@anthropic.com>
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.github/workflows/code-quality.yml

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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install -e ".[dev]"
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pip install -e . || echo "Package install failed, installing dev deps directly"
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pip install black ruff isort
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- name: Check code formatting with Black
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run: black --check --diff .
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install -e ".[dev]"
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pip install -e . || echo "Package install failed, installing deps directly"
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pip install mypy types-requests
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- name: Type check with MyPy
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run: mypy src/
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run: bandit -r src/ -f json -o bandit-report.json || true
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- name: Upload Bandit report
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uses: actions/upload-artifact@v3
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uses: actions/upload-artifact@v4
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if: always()
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with:
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name: bandit-report
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run: safety check --json --output safety-report.json || true
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- name: Upload Safety report
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uses: actions/upload-artifact@v3
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uses: actions/upload-artifact@v4
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if: always()
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with:
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name: safety-report
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run: xenon --max-absolute B --max-modules B --max-average A src/
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- name: Upload complexity report
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uses: actions/upload-artifact@v3
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uses: actions/upload-artifact@v4
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if: always()
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with:
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name: complexity-report
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install -e ".[dev]"
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pip install -e . || echo "Package install failed, installing deps directly"
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pip install pytest pytest-cov pytest-asyncio pytest-mock coverage
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- name: Run tests with coverage
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run: |
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name: codecov-umbrella
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- name: Upload coverage report
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uses: actions/upload-artifact@v3
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uses: actions/upload-artifact@v4
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if: always()
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with:
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name: coverage-report

.pre-commit-config.yaml

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- id: isort
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args: [--profile, black, --line-length, "100"]
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# Docstring formatting
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- repo: https://github.com/PyCQA/docformatter
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rev: v1.7.5
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hooks:
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- id: docformatter
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args: [--in-place, --wrap-summaries=100, --wrap-descriptions=100]
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# Check for common Python mistakes
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- repo: https://github.com/PyCQA/flake8
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rev: 6.1.0

.serena/.gitignore

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/cache

.serena/project.yml

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# language of the project (csharp, python, rust, java, typescript, go, cpp, or ruby)
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# * For C, use cpp
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# * For JavaScript, use typescript
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# Special requirements:
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# * csharp: Requires the presence of a .sln file in the project folder.
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language: python
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# whether to use the project's gitignore file to ignore files
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# Added on 2025-04-07
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ignore_all_files_in_gitignore: true
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# list of additional paths to ignore
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# same syntax as gitignore, so you can use * and **
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# Was previously called `ignored_dirs`, please update your config if you are using that.
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# Added (renamed) on 2025-04-07
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ignored_paths: []
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# whether the project is in read-only mode
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# If set to true, all editing tools will be disabled and attempts to use them will result in an error
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# Added on 2025-04-18
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read_only: false
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# list of tool names to exclude. We recommend not excluding any tools, see the readme for more details.
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# Below is the complete list of tools for convenience.
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# To make sure you have the latest list of tools, and to view their descriptions,
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# execute `uv run scripts/print_tool_overview.py`.
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#
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# * `activate_project`: Activates a project by name.
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# * `check_onboarding_performed`: Checks whether project onboarding was already performed.
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# * `create_text_file`: Creates/overwrites a file in the project directory.
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# * `delete_lines`: Deletes a range of lines within a file.
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# * `delete_memory`: Deletes a memory from Serena's project-specific memory store.
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# * `execute_shell_command`: Executes a shell command.
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# * `find_referencing_code_snippets`: Finds code snippets in which the symbol at the given location is referenced.
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# * `find_referencing_symbols`: Finds symbols that reference the symbol at the given location (optionally filtered by type).
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# * `find_symbol`: Performs a global (or local) search for symbols with/containing a given name/substring (optionally filtered by type).
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# * `get_current_config`: Prints the current configuration of the agent, including the active and available projects, tools, contexts, and modes.
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# * `get_symbols_overview`: Gets an overview of the top-level symbols defined in a given file.
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# * `initial_instructions`: Gets the initial instructions for the current project.
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# Should only be used in settings where the system prompt cannot be set,
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# e.g. in clients you have no control over, like Claude Desktop.
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# * `insert_after_symbol`: Inserts content after the end of the definition of a given symbol.
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# * `insert_at_line`: Inserts content at a given line in a file.
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# * `insert_before_symbol`: Inserts content before the beginning of the definition of a given symbol.
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# * `list_dir`: Lists files and directories in the given directory (optionally with recursion).
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# * `list_memories`: Lists memories in Serena's project-specific memory store.
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# * `onboarding`: Performs onboarding (identifying the project structure and essential tasks, e.g. for testing or building).
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# * `prepare_for_new_conversation`: Provides instructions for preparing for a new conversation (in order to continue with the necessary context).
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# * `read_file`: Reads a file within the project directory.
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# * `read_memory`: Reads the memory with the given name from Serena's project-specific memory store.
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# * `remove_project`: Removes a project from the Serena configuration.
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# * `replace_lines`: Replaces a range of lines within a file with new content.
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# * `replace_symbol_body`: Replaces the full definition of a symbol.
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# * `restart_language_server`: Restarts the language server, may be necessary when edits not through Serena happen.
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# * `search_for_pattern`: Performs a search for a pattern in the project.
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# * `summarize_changes`: Provides instructions for summarizing the changes made to the codebase.
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# * `switch_modes`: Activates modes by providing a list of their names
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# * `think_about_collected_information`: Thinking tool for pondering the completeness of collected information.
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# * `think_about_task_adherence`: Thinking tool for determining whether the agent is still on track with the current task.
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# * `think_about_whether_you_are_done`: Thinking tool for determining whether the task is truly completed.
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# * `write_memory`: Writes a named memory (for future reference) to Serena's project-specific memory store.
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excluded_tools: []
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# initial prompt for the project. It will always be given to the LLM upon activating the project
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# (contrary to the memories, which are loaded on demand).
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initial_prompt: ""
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project_name: "mujoco-mcp"

mcp-testing/README.md

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# MuJoCo MCP Multi-Client Testing
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Comprehensive testing setup for MuJoCo MCP server across different AI clients and platforms.
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## Supported Clients
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- **Claude Code** - Anthropic's official CLI
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- **Cursor** - AI-powered code editor
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- **Claude Desktop** - Official Anthropic desktop app
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- **OpenAI ChatGPT** - Via MCP bridge/proxy solutions
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## Supported Platforms
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- **macOS** (Intel & Apple Silicon)
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- **Linux** (Ubuntu 22.04+, Debian 11+)
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- **Windows** (Windows 10+, WSL2)
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## Quick Start
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1. **Setup Environment**:
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```bash
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./setup.sh [platform] # platform: macos|linux|windows
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```
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2. **Install MCP Server**:
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```bash
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pip install -e .
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```
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3. **Test Client Integration**:
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```bash
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./test-client.sh [client] # client: claude-code|cursor|claude-desktop|chatgpt
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```
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## Directory Structure
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```
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mcp-testing/
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├── configs/ # Client-specific configurations
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│ ├── claude-code/
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│ ├── cursor/
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│ ├── claude-desktop/
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│ └── chatgpt/
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├── scripts/ # Setup and testing scripts
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│ ├── setup/ # Platform-specific setup
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│ └── test/ # Testing utilities
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├── docs/ # Documentation
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└── results/ # Test results and logs
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```
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## Configuration Details
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Each client has specific configuration requirements and capabilities. See individual client documentation for detailed setup instructions.
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# OpenAI ChatGPT MCP Integration
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Since OpenAI ChatGPT doesn't natively support MCP, we provide a bridge that connects ChatGPT's function calling capabilities with MCP servers.
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## Setup
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1. **Install Dependencies**:
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```bash
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pip install -r requirements.txt
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```
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2. **Get OpenAI API Key**:
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- Visit [OpenAI API Keys](https://platform.openai.com/api-keys)
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- Create a new API key
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- Add billing information to your OpenAI account
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3. **Configure Environment**:
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```bash
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export OPENAI_API_KEY="your-api-key-here"
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export MUJOCO_GL="osmesa" # For headless rendering
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```
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4. **Install MuJoCo MCP**:
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```bash
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# From the root directory
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pip install -e .
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```
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## Usage
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### Command Line Bridge
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```bash
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python mcp-bridge.py
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```
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This starts an interactive session where you can:
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- Chat with GPT-4 enhanced with MuJoCo MCP functions
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- Use `/servers` to list available MCP servers
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- Use `/functions` to list available functions
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- Use `/quit` to exit
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### Example Conversation
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```
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You: Create a pendulum simulation and run it for 100 steps

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