Lab 04: Structuring Projects and Inputs

Structuring Projects and Inputs

Inspect project organization

Go to exercise directory 04_structure_and_input and change to the pipeline directory.

This project is organized as follows:

.
├── fasta_seqs
│   ├── seqs_1.fna
│   ├── seqs_2.fna
│   ├── seqs_3.fna
│   ├── seqs_4.fna
│   └── seqs_5.fna
├── pipeline
│   ├── main.nf
│   ├── modules
│   │   └── fasta_utils.nf
│   └── nextflow.config
└── run_01.sh

Notice that we now have a modules subdirectory containing 'fasta_utils.nf'. We also have a practice directory of 5 fasta sequence files.