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38273827 non-missing genotype. Note that the missingness is determined from INFO/AN
38283828 and AC tags when available to avoid parsing sample fields.
38293829
3830- *-v, --types* 'snps'|'indels'|'mnps'|'other'::
3830+ *-v, --types* 'snps'|'indels'|'mnps'|'ref'|'bnd'|' other'|'overlap '::
38313831 comma-separated list of variant types to select. Site is selected if
38323832 any of the ALT alleles is of the type requested. Types are determined
38333833 by comparing the REF and ALT alleles in the VCF record not INFO tags
38343834 like INFO/INDEL or INFO/VT. Use *--include* to select based on INFO
38353835 tags.
38363836
3837- *-V, --exclude-types* 'snps'|'indels'|'mnps'|'ref'|'bnd'|'other'::
3837+ *-V, --exclude-types* 'snps'|'indels'|'mnps'|'ref'|'bnd'|'other'|'overlap' ::
38383838 comma-separated list of variant types to exclude. Site is excluded if
38393839 any of the ALT alleles is of the type requested. Types are determined
38403840 by comparing the REF and ALT alleles in the VCF record not INFO tags
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