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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -1880,8 +1880,8 @@ \subsubsection{Type encoding}
18801880./. & where both alleles are missing & 0x00 00 \\ \hline
188118810 & as a haploid it is represented by a single byte & 0x02 \\ \hline
188218821 & as a haploid it is represented by a single byte & 0x04 \\ \hline
1883- 0/1/2 & is tetraploid , with alleles & 0x02 04 06 \\ \hline
1884- $ 0 /1 \mid 2 $ & is tetraploid with a single phased allele & 0x02 04 07 \\ \hline
1883+ 0/1/2 & is triploid , with alleles & 0x02 04 06 \\ \hline
1884+ $ 0 /1 \mid 2 $ & is triploid with a single phased allele & 0x02 04 07 \\ \hline
188518850 and 0/1 & pad out the final allele for the haploid individual & 0x02 81 02 04\\ \hline
18861886\end {tabular }
18871887\normalsize
Original file line number Diff line number Diff line change @@ -2309,9 +2309,9 @@ \subsubsection{Type encoding}
23092309./. & where both alleles are missing & 0x00 00 \\ \hline
231023100 & as an implicitly phased haploid it is represented by a single byte & 0x03 \\ \hline
231123111 & as an implicitly phased haploid it is represented by a single byte & 0x05 \\ \hline
2312- 0/1/2 & is tetraploid , with alleles & 0x02 04 06 \\ \hline
2313- $ 0 /1 \mid 2 $ & is tetraploid with a single phased allele & 0x02 04 07 \\ \hline
2314- 0 and 0/1 & pad out the final allele for the haploid individual & 0x02 81 02 04\\ \hline
2312+ 0/1/2 & is triploid , with alleles & 0x02 04 06 \\ \hline
2313+ $ 0 /1 \mid 2 $ & is triploid with a single phased allele & 0x02 04 07 \\ \hline
2314+ 0 and 0/1 & pad out the final allele for the haploid individual & 0x03 81 02 04\\ \hline
23152315\end {tabular }
23162316\normalsize
23172317
Original file line number Diff line number Diff line change @@ -2477,9 +2477,9 @@ \subsubsection{Type encoding}
24772477./. & where both alleles are missing & 0x00 00 \\ \hline
247824780 & as an implicitly phased haploid it is represented by a single byte & 0x03 \\ \hline
247924791 & as an implicitly phased haploid it is represented by a single byte & 0x05 \\ \hline
2480- 0/1/2 & is tetraploid , with alleles & 0x02 04 06 \\ \hline
2481- $ 0 /1 \mid 2 $ & is tetraploid with a single phased allele & 0x02 04 07 \\ \hline
2482- 0 and 0/1 & pad out the final allele for the haploid individual & 0x02 81 02 04\\ \hline
2480+ 0/1/2 & is triploid , with alleles & 0x02 04 06 \\ \hline
2481+ $ 0 /1 \mid 2 $ & is triploid with a single phased allele & 0x02 04 07 \\ \hline
2482+ 0 and 0/1 & pad out the final allele for the haploid individual & 0x03 81 02 04\\ \hline
24832483\end {tabular }
24842484\normalsize
24852485
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