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Vcf/gvcf example fix #853

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6f04649
Fixed semicolons in gVCF example
d-cameron Feb 24, 2026
00bf014
Removed <*> from records that don't need it
d-cameron Feb 24, 2026
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20 changes: 13 additions & 7 deletions VCFv4.5.tex
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Original file line number Diff line number Diff line change
Expand Up @@ -1864,13 +1864,13 @@ \subsection{Representing unspecified alleles and REF-only blocks (gVCF)}
\begin{flushleft}
\begin{tabular}{ l l l l l l l l l l }
\#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO & FORMAT & Sample \\
1 & 4370 & . & G & $<$*$>$ & . & . & END=4383 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:25:60:23:0,60,900;14 \\
1 & 4384 & . & C & $<$*$>$ & . & . & END=4388 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:25:45:25:0,42,630;4 \\
1 & 4389 & . & T & TC,$<$*$>$ & 213.73 & . & . & GT:DP:GQ:PL:LEN & 0/1:23:99:51,0,36,93,92,86 \\
1 & 4390 & . & C & $<$*$>$ & . & . & END=4390 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:26:0:26:0,0,315;1 \\
1 & 4391 & . & C & $<$*$>$ & . & . & END=4395 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:27:63:27:0,63,945;4 \\
1 & 4396 & . & G & C,$<$*$>$ & 0 & . & . & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:24:52:0,52,95,66,95,97 \\
1 & 4397 & . & T & $<$*$>$ & . & . & END=4416 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:22:14:22:0,15,593;19 \\
1 & 4370 & . & G & $<$*$>$ & . & . & END=4383 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:25:60:23:0,60,900:14 \\
1 & 4384 & . & C & $<$*$>$ & . & . & END=4388 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:25:45:25:0,42,630:4 \\
1 & 4389 & . & T & TC & . & . & GT:DP:GQ:PL & 0/1:23:99:51,0,36,93,92,86 \\
1 & 4390 & . & C & $<$*$>$ & . & . & END=4390 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:26:0:26:0,0,315:1 \\
1 & 4391 & . & C & $<$*$>$ & . & . & END=4395 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:27:63:27:0,63,945:4 \\
1 & 4396 & . & G & C & . & . & GT:DP:GQ:MIN\_DP:PL & 0/0:24:52:0,52,95,66,95,97 \\
1 & 4397 & . & T & $<$*$>$ & . & . & END=4416 & GT:DP:GQ:MIN\_DP:PL:LEN & 0/0:22:14:22:0,15,593:19 \\
\end{tabular}
\end{flushleft}
\normalsize
Expand Down Expand Up @@ -2723,6 +2723,12 @@ \subsection{BCF2 block gzip and indexing}

\section{List of changes}

\subsection{VCFv4.4 Errata}

\begin{itemize}
\item Fixed typos in gVCF example.
\end{itemize}

\subsection{Changes between VCFv4.5 and VCFv4.4}

\begin{itemize}
Expand Down