Fixes from review

jkbonfield · jkbonfield · commit 59d14e9f7477 · 2023-08-07T15:20:29.000+01:00
diff --git a/vcf.c b/vcf.c
@@ -2784,7 +2784,7 @@ static int vcf_parse_format_dict2(kstring_t *s, const bcf_hdr_t *h, bcf1_t *v,
         }
         fmt[j].max_l = fmt[j].max_m = fmt[j].max_g = 0;
         fmt[j].key = kh_val(d, k).id;
-        fmt[j].is_gt = (t[0] == 'G' && t[1] == 'T');//!strcmp(t, "GT");
+        fmt[j].is_gt = (t[0] == 'G' && t[1] == 'T' && !t[2]);
         fmt[j].y = h->id[0][fmt[j].key].val->info[BCF_HL_FMT];
         v->n_fmt++;
     }

Original file line number	Diff line number	Diff line change
`@@ -2784,7 +2784,7 @@ static int vcf_parse_format_dict2(kstring_t s, const bcf_hdr_t h, bcf1_t *v,`
`2784`	`2784`	`}`
`2785`	`2785`	`fmt[j].max_l = fmt[j].max_m = fmt[j].max_g = 0;`
`2786`	`2786`	`fmt[j].key = kh_val(d, k).id;`
`2787`		`- fmt[j].is_gt = (t[0] == 'G' && t[1] == 'T');//!strcmp(t, "GT");`
	`2787`	`+ fmt[j].is_gt = (t[0] == 'G' && t[1] == 'T' && !t[2]);`
`2788`	`2788`	`fmt[j].y = h->id[0][fmt[j].key].val->info[BCF_HL_FMT];`
`2789`	`2789`	`v->n_fmt++;`
`2790`	`2790`	`}`