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1 parent ad6fa24 commit 5af1b93Copy full SHA for 5af1b93
1 file changed
test/test.pl
@@ -264,8 +264,9 @@ sub test_view
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# Java pre-made CRAM -> SAM
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my $jcram = "${base}_java.cram";
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if (-e $jcram) {
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- testv "./test_view -i reference=$ref $jcram > $jcram.sam_";
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- testv "./compare_sam.pl -nomd $sam $jcram.sam_";
+ my $jsam = "${base}_java.tmp.sam";
+ testv "./test_view -i reference=$ref $jcram > $jsam";
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+ testv "./compare_sam.pl -nomd $sam $jsam";
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}
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if ($test_view_failures == 0)
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