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daviesrobdaviesrob
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Add VCF long reference tests.
Round trip test, including structural variation with END INFO tag. Indexing an existing file. Index look-up using tabix. Allow test_compare() to avoid differences due to newlines on Windows.
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‎test/longrefs/index.expected1.vcf‎

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1 10010000100 . C <*> 0 . DP=1;I16=0,1,0,0,37,1369,0,0,29,841,0,0,9,81,0,0;QS=1,0;MQ0F=0 PL 0,3,29
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1 10010000101 . T <*> 0 . DP=1;I16=0,1,0,0,38,1444,0,0,29,841,0,0,8,64,0,0;QS=1,0;MQ0F=0 PL 0,3,29
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1 10010000102 . T <*> 0 . DP=1;I16=0,1,0,0,36,1296,0,0,29,841,0,0,7,49,0,0;QS=1,0;MQ0F=0 PL 0,3,29
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1 10010000103 . G <*> 0 . DP=1;I16=0,1,0,0,37,1369,0,0,29,841,0,0,6,36,0,0;QS=1,0;MQ0F=0 PL 0,3,29
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1 10010000104 . G <*> 0 . DP=1;I16=0,1,0,0,38,1444,0,0,29,841,0,0,5,25,0,0;QS=1,0;MQ0F=0 PL 0,3,29
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1 10010000105 . A <*> 0 . DP=1;I16=0,1,0,0,37,1369,0,0,29,841,0,0,4,16,0,0;QS=1,0;MQ0F=0 PL 0,3,29

‎test/longrefs/index.expected2.vcf‎

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1 10010000110 . G <DEL> 0 . SVTYPE=DEL;SVLEN=-890;END=10010001000 PL 0,1,45

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