Remove redhat and try to install dolfinx from source #1
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| name: Test | ||
| on: | ||
| workflow_call: | ||
| inputs: | ||
| dolfinx_tag: | ||
| required: true | ||
| type: string | ||
| jobs: | ||
| get_image_tag: | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| image: ${{ steps.docker_tag.outputs.image }} | ||
| steps: | ||
| - name: Validate inputs | ||
| run: | | ||
| if [[ "${{ inputs.dolfinx_tag }}" != "stable" && "${{ inputs.dolfinx_tag }}" != "nightly"; then | ||
| echo "::error::Invalid DOLFINx enviroment: ${{ inputs.dolfinx_tag }}. Allowed values: stable, nightly" | ||
| exit 1 | ||
| fi | ||
| - id: Nightly | ||
| if: (${{ inputs.dolfinx_tag }} == 'nightly') | ||
| run: | | ||
| echo "branch=main" >> $GITHUB_OUTPUT | ||
| echo "image=current" >> $GITHUB_OUTPUT | ||
| - id: Stable | ||
| if: (${{ inputs.dolfinx_tag }} == 'stable') | ||
| run: | | ||
| echo "branch=release" >> $GITHUB_OUTPUT | ||
| echo "image=stable" >> $GITHUB_OUTPUT | ||
| test-code: | ||
| runs-on: ubuntu-latest | ||
| needs: get_image_tag | ||
| runs-on: ubuntu-latest | ||
| container: ghcr.io/fenics/dolfinx/dolfinx:${{ needs.get_image_tag.outputs.image }} | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| - name: Install DOLFINx | ||
| uses: jorgensd/actions/install-dolfinx@v0.4 | ||
| with: | ||
| dolfinx: ${{ needs.get_image_tag.outputs.branch }} | ||
| basix: ${{ needs.get_image_tag.outputs.branch }} | ||
| ufl: ${{ needs.get_image_tag.outputs.branch }} | ||
| ffcx: ${{ needs.get_image_tag.outputs.branch }} | ||
| working-directory: ${{ env.working-directory}} | ||
| - name: Update pip | ||
| run: python3 -m pip install --upgrade pip | ||
| - name: Install build requirements | ||
| run: python3 -m pip install -r build-requirements.txt | ||
| # Note: We assume the caller workflow has already uploaded these artifacts | ||
| - name: Download legacy mpich data | ||
| uses: actions/download-artifact@v7 | ||
| with: | ||
| name: legacy_mpich | ||
| path: ./legacy | ||
| - name: Download legacy checkpoint mpich data | ||
| uses: actions/download-artifact@v7 | ||
| with: | ||
| name: legacy_checkpoint_mpich | ||
| path: ./legacy_checkpoint | ||
| - name: Install package | ||
| run: | | ||
| HDF5_MPI=ON HDF5_PKGCONFIG_NAME="hdf5" python3 -m pip install h5py --no-build-isolation --no-binary=h5py | ||
| python3 -m pip install .[test] | ||
| - name: Show adios2 version | ||
| run: python3 -c "import adios2; print(adios2.__version__)" | ||
| - name: Show h5py version | ||
| run: python3 -c "import h5py; print(h5py.__version__)" | ||
| - name: Show hdf5 version | ||
| run: python3 -c "import h5py; print(h5py.version.hdf5_version)" | ||
| - name: Run tests | ||
| run: coverage run --rcfile=.coveragerc -m pytest -xvs ./tests/ | ||
| - name: Run tests in parallel | ||
| run: mpirun -n 4 coverage run --rcfile=.coveragerc -m mpi4py -m pytest -xvs ./tests/ | ||
| - name: Combine coverage reports | ||
| run: | | ||
| coverage combine | ||
| coverage report -m | ||
| coverage html | ||
| # Use the tag in the artifact name so parallel runs don't overwrite each other | ||
| - name: Upload coverage report | ||
| uses: actions/upload-artifact@v6 | ||
| with: | ||
| name: code-coverage-report-${{ inputs.dolfinx_tag }} | ||
| path: htmlcov | ||
| if-no-files-found: error | ||
