add alphapepttools to scverse ecosystem (#351)

* add alphapepttools meta and logo

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* add fix for validating bioconductor packages

* add check for bioconductor packages to validate_registry.py

* add check for bioconductor packages to validate_registry.py

* Silence complexity flag from linter on validate_packages function

* rename logo file, switch License identifier to correct syntax

* rename logo in meta.yaml

* replace logo with svg

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* replace logo with svg

* Update packages/alphapepttools/meta.yaml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>

Author: 3 people

packages/alphapepttools/logo.svg

@@ -0,0 +1,24 @@
+name: AlphaPeptTools
+description: |
+  AnnData-based downstream proteomics analysis package with comprehensive support of search engine report formats.
+  AlphaPeptTools features an `io` module for loading and standardizing MS-proteomics data, as well as `pp`, `pl`, `tl` and `metrics`
+  modules to facilitate common proteomics-specific data processing, visualization and analysis tasks with a focus on metrics for
+  evaluating the effect of different processing steps. Additionally, it features several example notebooks to demonstrate different
+  proteomics use cases.
+project_home: https://github.com/MannLabs/alphapepttools
+documentation_home: https://mannlabs.github.io/alphapepttools/index.html
+tutorials_home: https://github.com/MannLabs/alphapepttools/tree/main/docs/notebooks
+install:
+  pypi: alphapepttools
+tags:
+  - proteomics
+  - annotated data
+  - best practices
+license: Apache-2.0
+version: 0.2.0
+contact:
+  - vbrennsteiner
+  - lucas-diedrich
+  - mschwoer
+logo: logo.svg
+category: ecosystem