Skip to content

Add pyXenium to the scverse ecosystem #364

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
hutaobo wants to merge 2 commits into
base: main
Choose a base branch
from
Open

Add pyXenium to the scverse ecosystem #364

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
7774087
Add pyXenium ecosystem package metadata
hutaobo May 8, 2026
783a3fd
Use default Read the Docs URLs for pyXenium
hutaobo May 8, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
23 changes: 23 additions & 0 deletions packages/pyXenium/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
name: pyXenium
description: |
pyXenium is a Python toolkit for 10x Genomics Xenium data that combines Xenium I/O,
multimodal RNA+protein analysis, contour-aware spatial profiling, topology workflows,
GMI inference, mechanostress analysis, and optional external workflow bridges.
project_home: https://github.com/hutaobo/pyXenium
documentation_home: https://pyxenium.readthedocs.io/
tutorials_home: https://pyxenium.readthedocs.io/page/tutorials/index.html
install:
pypi: pyXenium
tags:
- xenium
- spatial omics
- spatial transcriptomics
- multimodal
- anndata
- pathology
license: AGPL-3.0-only
version: 0.4.5
contact:
- hutaobo
test_command: pip install -e ".[dev,docs]" && pytest -q && sphinx-build -b html docs docs/_build/html -W --keep-going
category: ecosystem
Loading