Tools Differential gene expression .. nbgallery:: notebooks/differential_gene_expression Pooled CRISPR screens .. nbgallery:: notebooks/perturbation_efficacy Compositional analysis .. nbgallery:: notebooks/sccoda notebooks/sccoda_extended notebooks/tasccoda notebooks/milo Multicellular and gene programs .. nbgallery:: notebooks/dialogue notebooks/enrichment Distances and permutation tests .. nbgallery:: notebooks/distances notebooks/distance_tests Response prediction .. nbgallery:: notebooks/augur notebooks/cinemaot notebooks/scgen_perturbation_prediction Batch correction .. nbgallery:: notebooks/scgen_batch_removal Perturbation space .. nbgallery:: notebooks/perturbation_space