Rapids 25.04 (#349)

* add first test

* update kernels

* update kernels

* update

* new rapids version

* update docs

* update docs

* update ubuntu

Author: Intron7

.github/workflows/docker.yml

@@ -27,7 +27,7 @@ jobs:
     strategy:
       matrix:
         RAPIDS_VER:
-          - 25.02
+          - 25.04
     name: Build Docker images
     runs-on: ubuntu-latest
     permissions:

conda/rsc_rapids_24.12.yml conda/rsc_rapids_25.04.ymlconda/rsc_rapids_24.12.yml renamed to conda/rsc_rapids_25.04.yml

@@ -5,9 +5,9 @@ channels:
  - conda-forge
  - bioconda
 dependencies:
- - rapids=24.12
+ - rapids=25.04
  - python=3.12
- - cuda-version=12.5
+ - cuda-version=12.8
  - cudnn
  - cutensor
  - cusparselt

docker/Dockerfile.deps

@@ -1,5 +1,5 @@
 ARG CUDA_VER=12.8.0
-ARG LINUX_VER=ubuntu22.04
+ARG LINUX_VER=ubuntu24.04
 
 FROM nvidia/cuda:${CUDA_VER}-base-${LINUX_VER}
 

docker/docker-push.sh

@@ -2,7 +2,7 @@
 set -euxo pipefail
 
 docker_account=scverse
-rapids_version=25.02
+rapids_version=25.04
 grep -v -- '- rapids-singlecell' conda/rsc_rapids_${rapids_version}.yml > rsc_rapids.yml
 docker build -t rapids-singlecell-deps:latest -f docker/Dockerfile.deps .
 rm rsc_rapids.yml

docs/Installation.md

@@ -4,8 +4,12 @@ The easiest way to install *rapids-singlecell* is to use one of the *yaml* file
 ```
 conda env create -f conda/rsc_rapids_25.02.yml #default CUDA-12.5
 # or
-mamba env create -f conda/rsc_rapids_24.12.yml #default CUDA-12.5
+mamba env create -f conda/rsc_rapids_25.04.yml #default CUDA-12.8
 ```
+```{note}
+RAPIDS currently doesn't support `channel_priority: strict`; use `channel_priority: flexible` instead
+```
+
 ## PyPI
 As of version 0.4.0 *rapids-singlecell* is now on PyPI.
 ```

docs/release-notes/0.12.2.md

@@ -1,4 +1,4 @@
-### 0.12.1 {small}`the-future`
+### 0.12.2 {small}`the-future`
 
 ```{rubric} Features
 ```
@@ -13,3 +13,6 @@
 
 ```{rubric} Misc
 ```
+* rsc is now tested with `RAPIDS-25.04` {pr}`349` {smaller}`S Dicks`
+* rapids-singlecell now installs with `RAPIDS-25.04` {pr}`349` {smaller}`S Dicks`
+* Updates the docker for `RAPIDS-25.04` {pr}`349` {smaller}`S Dicks`

pyproject.toml

@@ -26,8 +26,8 @@ dependencies = [
 ]
 
 [project.optional-dependencies]
-rapids11 = [ "cupy-cuda11x", "cudf-cu11==25.02.*", "cuml-cu11==25.02.*", "cugraph-cu11==25.02.*" ]
-rapids12 = [ "cupy-cuda12x", "cudf-cu12==25.02.*", "cuml-cu12==25.02.*", "cugraph-cu12==25.02.*" ]
+rapids11 = [ "cupy-cuda11x", "cudf-cu11==25.04.*", "cuml-cu11==25.04.*", "cugraph-cu11==25.04.*" ]
+rapids12 = [ "cupy-cuda12x", "cudf-cu12==25.04.*", "cuml-cu12==25.04.*", "cugraph-cu12==25.04.*" ]
 doc = [
     "sphinx>=4.5.0",
     "sphinx-copybutton",