diff --git a/docs/release-notes/0.13.0.md b/docs/release-notes/0.13.0.md index dd8a730d..0dcd2b9e 100644 --- a/docs/release-notes/0.13.0.md +++ b/docs/release-notes/0.13.0.md @@ -1,4 +1,4 @@ -### 0.13.0 {small}`the-future` +### 0.13.0 {small}`2025-08-06` ```{rubric} Features ``` @@ -9,6 +9,7 @@ ```{rubric} Performance ``` +* speed up `pp.harmony_integrate` for smaller datasets {pr}`421` {smaller}`S Dicks` ```{rubric} Bug fixes ``` diff --git a/src/rapids_singlecell/preprocessing/_harmony/_helper.py b/src/rapids_singlecell/preprocessing/_harmony/_helper.py index dc663e29..dc3527f7 100644 --- a/src/rapids_singlecell/preprocessing/_harmony/_helper.py +++ b/src/rapids_singlecell/preprocessing/_harmony/_helper.py @@ -196,7 +196,7 @@ def _scatter_add_cp_bias_csr( n_pcs = X.shape[1] threads_per_block = 1024 - if n_cells < 100_000: + if n_cells < 300_000: blocks = int((n_pcs + 1) / 2) scatter_kernel0 = _get_scatter_add_kernel_with_bias_cat0(X.dtype) scatter_kernel0(