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Update installation.md #653

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10 changes: 10 additions & 0 deletions docs/installation.md
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Expand Up @@ -202,7 +202,17 @@ Then run the following command to execute the container:
```bash
apptainer run --nv rsc.sif
```
### Running on HPC systems with SLURM

When running on HPC systems via SLURM, conda must be explicitly activated before running Python scripts. Use `apptainer exec` instead of `apptainer run`:

```bash
apptainer exec --nv \
--bind /path/to/your/data:/path/to/your/data \
rsc.sif \
bash -c "source /opt/conda/etc/profile.d/conda.sh && conda activate base && python"
```
Without sourcing conda first, `CONDA_PREFIX` will be unset and CuPy will fail to locate the CUDA libraries inside the container, resulting in a `TypeError: expected str, bytes or os.PathLike object, not NoneType` error.

# System requirements

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