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Pull requests: scverse/rustar-aligner

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Pull requests list

fix(params): treat --outFileNamePrefix as a literal string prefix
#46 opened May 12, 2026 by pinin4fjords Loading…
8 tasks done
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fix(sjdb): key SpliceJunctionDb in genome-absolute 0-based coordinates
#45 opened May 12, 2026 by pinin4fjords Loading…
6 tasks done
1
fix(output): move pass-1 SJ tab into <prefix>_STARpass1/SJ.out.tab
#44 opened May 12, 2026 by pinin4fjords Loading…
6 tasks done
feat(bam): emit XS:A: strand tag when --outSAMstrandField intronMotif
#43 opened May 12, 2026 by pinin4fjords Loading…
5 tasks done
1
1
fix(bam): emit SAM-spec NM:i: tag distinct from STAR-internal nM:i:
#42 opened May 12, 2026 by pinin4fjords Loading…
5 tasks done
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1
fix(transcriptome-bam): populate mate fields on paired-end records
#41 opened May 12, 2026 by pinin4fjords Loading…
5 tasks done
1
1
feat(bam): populate @PG header with PN/VN/CL fields
#40 opened May 12, 2026 by pinin4fjords Loading…
6 tasks done
1
fix(transcriptome-bam): write per-record RG:Z: tag matching @RG header
#39 opened May 12, 2026 by pinin4fjords Loading…
6 tasks done
1
1
fix(bam): subtract Phred+33 offset from QUAL before writing to BAM
#38 opened May 12, 2026 by pinin4fjords Loading…
5 tasks done
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1
fix(chimeric): create output parent directory before writing
#37 opened May 12, 2026 by pinin4fjords Loading…
5 tasks done
1
1
feat(params): accept --limitGenomeGenerateRAM for STAR CLI compatibility
#36 opened May 12, 2026 by pinin4fjords Loading…
5 tasks done
1
3
chore: enable clippy for tests
#24 opened May 12, 2026 by flying-sheep Member Loading…
2
Bump memmap2 from 0.9.9 to 0.9.10 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#13 opened Apr 24, 2026 by dependabot Bot Loading…
chore(deps): Bump rand from 0.8.6 to 0.10.1 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#12 opened Apr 24, 2026 by dependabot Bot Loading…
Bump noodles from 0.80.0 to 0.109.0 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#11 opened Apr 24, 2026 by dependabot Bot Loading…
ProTip! What’s not been updated in a month: updated:<2026-04-12.