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Unify method/flavor/backend/… parameters

Area – APIAPI designAPI design

Status: Open.

#2828 In scverse/scanpy;

· flying-sheep opened on Jan 25, 2024

Change default leiden clustering backend to igraph, and reduce default number of iterations

Area - Topology 🍩Neighbor graphsNeighbor graphs

breaking change ‼️

Status: Open.

Enhancement

#2865 In scverse/scanpy;

· ivirshup opened on Feb 19, 2024

[Proposal] Integrate Marsilea to visualize AnnData

Area - Plotting 🌺

Status: Open.

Enhancement

#2444 In scverse/scanpy;

· Mr-Milk opened on Mar 9, 2023

fix: consistent modularity by using Weighted_Adjacency directly

Status: Open (in progress).

scverse/scanpynumber 4113

#4113 In scverse/scanpy;

· flying-sheep opened on May 8, 2026