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Backport PR #4031 on branch 1.12.x (fix: copy connectivities before passing to umap-learn) #4047

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Merged
flying-sheep merged 2 commits into from
Apr 10, 2026
+17 −1

Merge branch '1.12.x' into auto-backport-of-pr-4031-on-1.12.x

d907571
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Merged

Backport PR #4031 on branch 1.12.x (fix: copy connectivities before passing to umap-learn) #4047

Merge branch '1.12.x' into auto-backport-of-pr-4031-on-1.12.x
d907571
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Codecov / codecov/project succeeded Apr 10, 2026 in 0s

78.32% (target 75.00%)

View this Pull Request on Codecov

78.32% (target 75.00%)

Details

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.32%. Comparing base (98b2af8) to head (d907571).
✅ All tests successful. No failed tests found.

Additional details and impacted files 
@@           Coverage Diff           @@
##           1.12.x    #4047   +/-   ##
=======================================
  Coverage   78.32%   78.32%           
=======================================
  Files         117      117           
  Lines       12597    12597           
=======================================
  Hits         9866     9866           
  Misses       2731     2731
Files with missing lines Coverage Δ
src/scanpy/tools/_umap.py 69.84% <ø> (ø)
View more details on Codecov