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feat: supporting sparse mode in DataSplitter#3840

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ori-kron-wis wants to merge 13 commits into
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feat/sparse-input-csr
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feat: supporting sparse mode in DataSplitter#3840
ori-kron-wis wants to merge 13 commits into
mainfrom
feat/sparse-input-csr

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@ori-kron-wis ori-kron-wis self-assigned this Jun 11, 2026
@ori-kron-wis ori-kron-wis added cuda tests Run test suite on CUDA on-merge: backport to 1.4.x on-merge: backport to 1.4.x labels Jun 11, 2026

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Reviewed commit: c8e1d5cb5f

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Comment thread src/scvi/nn/_base_components.py Outdated
Comment thread src/scvi/dataloaders/_data_splitting.py
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codecov Bot commented Jun 11, 2026

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Codecov Report

❌ Patch coverage is 94.23077% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 83.25%. Comparing base (481b92e) to head (ede65ef).

Files with missing lines Patch % Lines
src/scvi/dataloaders/_data_splitting.py 89.47% 2 Missing ⚠️
src/scvi/nn/_base_components.py 94.44% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3840      +/-   ##
==========================================
- Coverage   88.58%   83.25%   -5.33%     
==========================================
  Files         240      254      +14     
  Lines       23658    26014    +2356     
==========================================
+ Hits        20957    21659     +702     
- Misses       2701     4355    +1654     
Flag Coverage Δ
cuda 74.73% <94.23%> (+0.03%) ⬆️
integration 74.69% <94.23%> (+0.03%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scvi/data/_utils.py 88.26% <100.00%> (+0.33%) ⬆️
src/scvi/module/_vae.py 96.64% <100.00%> (-0.27%) ⬇️
src/scvi/nn/_base_components.py 94.77% <94.44%> (-0.03%) ⬇️
src/scvi/dataloaders/_data_splitting.py 95.75% <89.47%> (-0.59%) ⬇️

... and 30 files with indirect coverage changes

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@ori-kron-wis ori-kron-wis added on-merge: backport to 1.5.x on-merge: backport to 1.5.x and removed on-merge: backport to 1.4.x on-merge: backport to 1.4.x labels Jul 7, 2026
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