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Pull requests: scverse/scvi-tools

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Pull requests list

fix(resolvi): reduce peak memory during RESOLVI.load() on-merge: backport to 1.4.x on-merge: backport to 1.4.x optional tests Run optional tests
#3887 opened Jun 28, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
fix(resolvi): reduce peak memory during RESOLVI.load() on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3886 opened Jun 26, 2026 by Qiaoli-Li-Res Loading…
docs: updated docs of models with ref links on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3885 opened Jun 25, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
1
feat: joint embedding scvi on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3884 opened Jun 25, 2026 by ori-kron-wis Collaborator Loading…
1
feat: Add JointEmbeddingSCVI model on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3883 opened Jun 25, 2026 by vals Contributor Loading…
3
Extract seam methods from FCLayers for easier inheritance on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3880 opened Jun 24, 2026 by moinfar Loading…
1
Fix scArches query mapping for models using a batch embedding on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3879 opened Jun 23, 2026 by moinfar Loading…
1
Add DRVI on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3866 opened Jun 21, 2026 by moinfar Loading…
23
feat: supporting sparse mode in DataSplitter cuda tests Run test suite on CUDA on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3840 opened Jun 11, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
4
feat: scvix reformat on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3827 opened May 28, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
3
First draft of scPoli on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3824 opened May 23, 2026 by canergen Member Loading…
1
scVI-X release on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3823 opened May 22, 2026 by canergen Member Loading…
27
feat: add harreman for metabolic exchange inference in spatial transcriptomics cuda tests Run test suite on CUDA on-merge: backport to 1.4.x on-merge: backport to 1.4.x optional tests Run optional tests
#3806 opened May 12, 2026 by oieretxezarreta Loading…
35
feat: Add RESOLVI graph dataloader integration and benchmark CI on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3798 opened May 5, 2026 by ori-kron-wis Collaborator • Draft
@ori-kron-wis
2
feat: add shared memory for DDP data deduplication on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3754 opened Mar 19, 2026 by ori-kron-wis Collaborator • Draft
@ori-kron-wis
1
feat: JointEmbeddingSCVI on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3748 opened Mar 12, 2026 by ori-kron-wis Collaborator • Draft
@ori-kron-wis
2
Feat: Asymmetric n_layers for encoder/decoder on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3702 opened Feb 8, 2026 by ori-kron-wis Collaborator Loading…
1
@ori-kron-wis
2
refactor: Use scverse template on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3607 opened Nov 18, 2025 by ori-kron-wis Collaborator Loading…
1
@ori-kron-wis
2
model: SENAVAE on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3571 opened Oct 22, 2025 by ori-kron-wis Collaborator Loading…
11
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