1.5.0

What's Changed

• Annbatch tuto by @ori-kron-wis in #526
• fix: update several data sources to be scverse's + diagvi local runs by @ori-kron-wis in #527
• TOTALANVI TUTORIALS by @ori-kron-wis in #528
• TOTALANVI TUTORIALS by @ori-kron-wis in #529
• Update run_notebook.yaml by @ori-kron-wis in #530
• automated update for multimodal/totalanvi.ipynb by @github-actions[bot] in #531
• fix: Remove jax from toutorrial by @ori-kron-wis in #533
• Add JointEmbeddingSCVI tutorial for low-count cell embeddings by @vals in #534
• update joint embeddings tutorial by @ori-kron-wis in #535
• Add DRVI general pipeline notebook by @moinfar in #539

New Contributors

• @vals made their first contribution in #534
• @moinfar made their first contribution in #539

Full Changelog: 1.4.3...1.5.0

1.4.3

What's Changed

• DiagVI tutorials by @michelta00 in #508

1.4.2

What's Changed

• automated update for quick_start/api_overview.ipynb by @github-actions[bot] in #499
• updates for hub tutorials by @ori-kron-wis in #505
• Tutorials general updates: mostly data moved scverse hosted s3 bucket and few api changes. by @ori-kron-wis in #510
• typo in totalvi tutorial by @ori-kron-wis in #512

Full Changelog: 1.4.1...1.4.2

1.4.1

What's Changed

• R: updated R tutorials by @ori-kron-wis in #487
• updated destvi tutorial by @ori-kron-wis in #495
• Add get_normalized_accesssibility in multivi tutorial + destvi tutorial updates + mrvi tutorial fixes by @ori-kron-wis in #496

Full Changelog: 1.4.0...1.4.1

1.4.0.post1

Merge pull request #483 from scverse/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

1.4.0

What's Changed

• Integration of CytoVI tutorials by @florianingelfinger in #467
• mention that resolVI can be used as first embedding model by @LevyNat in #471
• Add scarches functionality to sysVI tutorial by @Hrovatin in #468
• MRVI in torch tutorials + applied on Tahoe100 by @ori-kron-wis in #469
• change the tests to be on py3.13 by default by @ori-kron-wis in #475
• Fix in autotune_scvi.ipynb by @ori-kron-wis in #476
• automated update for use_cases/autotune_scvi.ipynb by @github-actions[bot] in #478

New Contributors

• @florianingelfinger made their first contribution in #467

Full Changelog: 1.3.3...v1.4.0

1.3.3

What's Changed

• fix bad tutorials file names by @ori-kron-wis in #456
• docs: New AnnCollection Tutorial by @ori-kron-wis in #450

Full Changelog: 1.3.2...1.3.3

1.3.2

What's Changed

• Tutorials New Location Because of New RTD tutorials Filtering Scheme by @ori-kron-wis in #436
• updates by @ori-kron-wis in #439
• NicheVI tuto by @LevyNat in #423
• automated update for atac/PeakVI.ipynb by @github-actions in #447
• automated update for multimodal/totalVI.ipynb by @github-actions in #448
• Taho100M cells Hub tutorial by @ori-kron-wis in #453
• automated update for scrna/harmonization.ipynb by @github-actions in #449
• automated update for spatial/DestVI_tutorial.ipynb by @github-actions in #451
• automated update for multimodal/MultiVI_tutorial.ipynb by @github-actions in #441
• add preprocessing tutorial with multiple examples by @lordy5 in #398

New Contributors

• @LevyNat made their first contribution in #423
• @lordy5 made their first contribution in #398

Full Changelog: 1.3.1...1.3.2

1.3.1.post1

Merge pull request #454 from scverse/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

1.3.1

What's Changed

• added custom dataloaders initial tutos by @ori-kron-wis in #425

Full Changelog: 1.3.0...1.3.1