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src/spatialdata_io/readers Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -495,12 +495,13 @@ def _get_polygons(
495495 # cell_id, merging multiple nuclei of multinucleate cells into a single degenerate polygon.
496496 # The resulting geometry is invalid (two rings concatenated as one), so we skip nucleus
497497 # boundaries entirely for this format version.
498- # See: https://github.com/scverse/spatialdata-io/discussions/XXX
498+ # See: https://github.com/scverse/spatialdata-io/discussions/387
499499 warnings .warn (
500500 "Nucleus boundaries are not supported for this Xenium format version (v2.0.0 early "
501501 "builds without label_id in the parquet). The parquet merges multinucleate cells into "
502502 "degenerate polygons. Skipping nucleus boundaries. You can derive nucleus polygons from "
503- "the raster labels using spatialdata.to_polygons()." ,
503+ "the raster labels using spatialdata.to_polygons(). "
504+ "See https://github.com/scverse/spatialdata-io/discussions/387 for details." ,
504505 UserWarning ,
505506 stacklevel = 3 ,
506507 )
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