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1 parent 19b6cbf commit 4decbadCopy full SHA for 4decbad
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src/spatialdata_io/readers/steinbock.py
@@ -87,9 +87,11 @@ def steinbock(
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# duplicate of adata.obs['image']
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del adata.obs["Image"]
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- # / is an invalid character
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- adata.var["Final Concentration"] = adata.var["Final Concentration / Dilution"]
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- del adata.var["Final Concentration / Dilution"]
+ # for backwards compatibility with the demo dataset from spatialdata-io
+ if "Final Concentration / Dilution" in adata.var.columns:
+ # / is an invalid character
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+ adata.var["Final Concentration"] = adata.var["Final Concentration / Dilution"]
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+ del adata.var["Final Concentration / Dilution"]
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# replace all spaces with underscores
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adata.var.columns = adata.var.columns.str.replace(" ", "_")
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