update changelog

Author: LucaMarconato

CHANGELOG.md

@@ -10,139 +10,140 @@ and this project adheres to [Semantic Versioning][].
 
 ## incoming release
 
-- (Visium/Visium HD) lowres and hires images now mapped also to the 'global' coordinate system #230
-- (Macsima) added support @berombau #224
-- (seqFISH) support for v2 instrument #227
+-   (Visium/Visium HD) lowres and hires images now mapped also to the 'global' coordinate system #230
+-   (Macsima) added support @berombau #224
+-   (seqFISH) support for v2 instrument #227
+-   (Visium HD) added argument `annotate_table_by_labels` to rasterize the bins as labels #211 @ArneDefauw
 
 ## [0.1.6] - 2024-11-26
 
-- (MERSCOPE) added `feature_key` attribute for points (i.e., the `'gene'` column) #210
-- (Visium HD) get transformation matrices even when only images are parsed #215
-- Support for `xarray.DataTree` (which was moved from `datatree.DataTree`) #232
+-   (MERSCOPE) added `feature_key` attribute for points (i.e., the `'gene'` column) #210
+-   (Visium HD) get transformation matrices even when only images are parsed #215
+-   Support for `xarray.DataTree` (which was moved from `datatree.DataTree`) #232
 
 ## [0.1.5] - 2024-09-25
 
 ### Added
 
-- (Xenium) added `dims` parameter for more control in `xenium_aligned_image()`
+-   (Xenium) added `dims` parameter for more control in `xenium_aligned_image()`
 
 ### Fixed
 
-- Passing `rgb=None` to image model parser for both visium and visiumhd, leading to 3-4 channel images being
-  interpreted as RGB(A)
-- Fix header bug Visium data #200
-- (Visium HD) Fix path parsing when images are missing #204 #206
+-   Passing `rgb=None` to image model parser for both visium and visiumhd, leading to 3-4 channel images being
+    interpreted as RGB(A)
+-   Fix header bug Visium data #200
+-   (Visium HD) Fix path parsing when images are missing #204 #206
 
 ## [0.1.4] - 2024-08-07
 
 ### Changed
 
-- (Xenium) changed default target of table to labels; radii of circles computed from cells, not nuclei #179
-- (Visium HD) changed default geometry to squares from circles for the bins; added parameter to choose #183
-- (CosMx) dropping points element with zero-length from the cosmx reader #191
+-   (Xenium) changed default target of table to labels; radii of circles computed from cells, not nuclei #179
+-   (Visium HD) changed default geometry to squares from circles for the bins; added parameter to choose #183
+-   (CosMx) dropping points element with zero-length from the cosmx reader #191
 
 ## [0.1.3] - 2024-07-03
 
 ### Added
 
-- (Xenium) support reading multi-polygon selection files from the Xenium Explorer
-- (ISS) An experimental loader to load elemental ISS data objects, e.g. raw.tif, label.tif and anndata.h5ad
-- (Stereo-seq) Added reader @LLehner @timtreis @florianingelfinger #70
-- (MERSCOPE) Optional rioxarray backend for MERSCOPE data (reads chunks)
-- (MERSCOPE) Can choose which elements should be loaded
+-   (Xenium) support reading multi-polygon selection files from the Xenium Explorer
+-   (ISS) An experimental loader to load elemental ISS data objects, e.g. raw.tif, label.tif and anndata.h5ad
+-   (Stereo-seq) Added reader @LLehner @timtreis @florianingelfinger #70
+-   (MERSCOPE) Optional rioxarray backend for MERSCOPE data (reads chunks)
+-   (MERSCOPE) Can choose which elements should be loaded
 
 ### Fixed
 
-- (Visium) Fixed issue with joining a SpatialElement with a table due to index values not being unique.
-  obs_names_make_unique is now called internally to enforce unique index values allowing for join operations.
+-   (Visium) Fixed issue with joining a SpatialElement with a table due to index values not being unique.
+    obs_names_make_unique is now called internally to enforce unique index values allowing for join operations.
 
 ### Changed
 
-- (MERSCOPE) "global" coordinate system is used as a default instead of "microns"
+-   (MERSCOPE) "global" coordinate system is used as a default instead of "microns"
 
 ## [0.1.2] - 2024-03-30
 
 ### Added
 
-- (Visium HD) added reader, coauthored by @LLehner
+-   (Visium HD) added reader, coauthored by @LLehner
 
 ### Fixed
 
-- (Xenium) reader for 1.0.1 (paper data) and unknown versions
-- (Xenium) fix in reading "minimalistic" Xenium datasets #132
+-   (Xenium) reader for 1.0.1 (paper data) and unknown versions
+-   (Xenium) fix in reading "minimalistic" Xenium datasets #132
 
 ## [0.1.1] - 2024-03-24
 
 ### Added
 
-- (Xenium) support for post-xenium aligned images (IF, HE)
-- (Xenium) reader for the selection coordinates file from the Xenium Explorer
-- (Xenium) support for the new Xenium 2.0.0 (multimodal segmentation)
-- (Xenium) reading multiscale labels from cells.zarr.zip
-- (MCMICRO) support for TMAs (such as the data of exemplar-002)
-- (DBiT-seq) reader
-- converter functions `experimental.to_legacy_anndata()` and `experimental.from_legacy_anndata()`
-- (Visium) support for raw reads (capture locations not under tissue)
+-   (Xenium) support for post-xenium aligned images (IF, HE)
+-   (Xenium) reader for the selection coordinates file from the Xenium Explorer
+-   (Xenium) support for the new Xenium 2.0.0 (multimodal segmentation)
+-   (Xenium) reading multiscale labels from cells.zarr.zip
+-   (MCMICRO) support for TMAs (such as the data of exemplar-002)
+-   (DBiT-seq) reader
+-   converter functions `experimental.to_legacy_anndata()` and `experimental.from_legacy_anndata()`
+-   (Visium) support for raw reads (capture locations not under tissue)
 
 ### Fixed
 
-- (Xenium) fixed index (fail on write)
-- (Xenium) renamed cells_as_shapes to cells_as_circles; set default to True
-- (MERSCOPE) don't try to load unexisting elements #87
-- (Visium) fixed axes ordering
+-   (Xenium) fixed index (fail on write)
+-   (Xenium) renamed cells_as_shapes to cells_as_circles; set default to True
+-   (MERSCOPE) don't try to load unexisting elements #87
+-   (Visium) fixed axes ordering
 
 ## [0.0.9] - 2023-11-06
 
 ### Fixed
 
-- (Xenium) bug when converting feature_name #81, from @fbnrst
-- (Visium) visium() supports file counts without dataset_id #91
+-   (Xenium) bug when converting feature_name #81, from @fbnrst
+-   (Visium) visium() supports file counts without dataset_id #91
 
 ## [0.0.8] - 2023-10-02
 
 ### Fixed
 
-- (Xenium) coerce cell id to str #64
-- (MERSCOPE) fix coordinate transformation #68
-- (MERSCOPE) Improvements/fixes: merscope reader #73
+-   (Xenium) coerce cell id to str #64
+-   (MERSCOPE) fix coordinate transformation #68
+-   (MERSCOPE) Improvements/fixes: merscope reader #73
 
 ## [0.0.7] - 2023-07-23
 
 ### Fixed
 
-- Bugs in Xenium and MERSCOPE
+-   Bugs in Xenium and MERSCOPE
 
 ## [0.0.5] - 2023-06-21
 
 ### Added
 
-- MERFISH reader (from @quentinblampey)
-- CODEX reader (from @LLehner)
+-   MERFISH reader (from @quentinblampey)
+-   CODEX reader (from @LLehner)
 
 ### Fixed
 
-- Issues on Visium reader (thanks @ilia-kats) and Xenium reader
+-   Issues on Visium reader (thanks @ilia-kats) and Xenium reader
 
 ## [0.0.4] - 2023-05-23
 
 ### Added
 
-- Curio reader
+-   Curio reader
 
 ## [0.0.3] - 2023-05-22
 
 ### Merged
 
-- Merge pull request #40 from scverse/fix/categories
+-   Merge pull request #40 from scverse/fix/categories
 
 ## [0.0.2] - 2023-05-04
 
 ### Changed
 
-- Revert version regex (#37)
+-   Revert version regex (#37)
 
 ## [0.0.1] - 2023-05-04
 
 ### Tested
 
-- Test installation from pypi
+-   Test installation from pypi