fix tests and pre-commit

Author: LucaMarconato

src/spatialdata_io/__init__.py

@@ -37,9 +37,9 @@
 ]
 
 _readers_file_types = [
-    "read_generic",
-    "read_image",
-    "read_geojson",
+    "generic",
+    "image",
+    "geojson",
 ]
 
 _converters = [

src/spatialdata_io/converters/generic_to_zarr.py

@@ -48,7 +48,7 @@ def generic_to_zarr(
 
     Notes
     -----
-    This function reads data using the `read_generic` method from `spatialdata_io` and writes it to a zarr store
+    This function reads data using the `generic()` method from `spatialdata_io` and writes it to a zarr store
     using the `SpatialData` class. It handles both existing and new zarr stores, ensuring that data is appropriately
     appended or initialized.
     """

tests/_utils.py

@@ -26,6 +26,6 @@ def skip_if_below_python_version() -> pytest.mark.skipif:
     >>> def test_some_feature():
     >>>     assert True
     """
-    MIN_VERSION = (3, 11)
+    MIN_VERSION = (3, 12)
     reason = f"Test requires Python {'.'.join(map(str, MIN_VERSION))} or higher"
     return pytest.mark.skipif(sys.version_info < MIN_VERSION, reason=reason)

tests/converters/test_legacy_anndata.py

@@ -9,7 +9,10 @@
 from spatialdata.testing import assert_spatial_data_objects_are_identical
 from spatialdata.transformations import get_transformation, set_transformation
 
-from spatialdata_io.experimental import from_legacy_anndata, to_legacy_anndata
+from spatialdata_io.converters.legacy_anndata import (
+    from_legacy_anndata,
+    to_legacy_anndata,
+)
 
 BlobsTypes = Literal["blobs_labels", "blobs_circles", "blobs_polygons", "blobs_multipolygons"]