Skip to content

Commit f1366bd

Browse files
authored
Update legacy_anndata.py
rgb format
1 parent d2fe0bc commit f1366bd

1 file changed

Lines changed: 4 additions & 2 deletions

File tree

src/spatialdata_io/converters/legacy_anndata.py

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -293,7 +293,8 @@ def from_legacy_anndata(adata: AnnData) -> SpatialData:
293293
"tissue_hires_scalef is required when an the hires image is present"
294294
)
295295
hires_image = Image2DModel.parse(
296-
hires, dims=("y", "x", "c"), transformations={f"{dataset_id}_downscaled_hires": Identity()}
296+
hires, dims=("y", "x", "c"), transformations={f"{dataset_id}_downscaled_hires": Identity()},
297+
rgb=None,
297298
)
298299
images[f"{dataset_id}_hires_image"] = hires_image
299300

@@ -306,7 +307,8 @@ def from_legacy_anndata(adata: AnnData) -> SpatialData:
306307
"tissue_lowres_scalef is required when an the lowres image is present"
307308
)
308309
lowres_image = Image2DModel.parse(
309-
lowres, dims=("y", "x", "c"), transformations={f"{dataset_id}_downscaled_lowres": Identity()}
310+
lowres, dims=("y", "x", "c"), transformations={f"{dataset_id}_downscaled_lowres": Identity()},
311+
rgb=None,
310312
)
311313
images[f"{dataset_id}_lowres_image"] = lowres_image
312314

0 commit comments

Comments
 (0)