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Modify from_legacy_anndata so that it can read older ST datasets#347

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LucaMarconato merged 4 commits into
mainfrom
improve_legacy_adata_reader
Jan 8, 2026
Merged

Modify from_legacy_anndata so that it can read older ST datasets#347
LucaMarconato merged 4 commits into
mainfrom
improve_legacy_adata_reader

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@timtreis
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codecov-commenter commented Jan 8, 2026

Codecov Report

❌ Patch coverage is 10.25641% with 35 lines in your changes missing coverage. Please review.
✅ Project coverage is 55.23%. Comparing base (28d05a2) to head (6080158).

Files with missing lines Patch % Lines
src/spatialdata_io/converters/legacy_anndata.py 10.25% 35 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #347      +/-   ##
==========================================
- Coverage   55.25%   55.23%   -0.03%     
==========================================
  Files          26       26              
  Lines        2843     2848       +5     
==========================================
+ Hits         1571     1573       +2     
- Misses       1272     1275       +3     
Files with missing lines Coverage Δ
src/spatialdata_io/converters/legacy_anndata.py 51.36% <10.25%> (-0.41%) ⬇️
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@LucaMarconato
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Thanks @timtreis.

I changed one comment to match the order of some operations in the code. I also moved one logger.warning() to logger.debug() as one of the log was not a warning and I didn't want to print messages by default (logger.info()).

@LucaMarconato LucaMarconato merged commit 6be7296 into main Jan 8, 2026
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@LucaMarconato LucaMarconato deleted the improve_legacy_adata_reader branch January 8, 2026 14:29
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3 participants