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(Improvement)Optimize VectorType deserialization with Cython deserializer
Addded DesVectorType Cython deserializer with C-level optimizations for improved performance in row parsing for vectors. The deserializer uses: - Direct C byte swapping (ntohl, ntohs) for numeric types - Memory operations without Python object overhead - Unified numpy path for large vectors (≥32 elements) - struct.unpack fallback for small vectors (<32 elements) Performance improvements: - Small vectors (3-4 elements): 4.4-4.7x faster - Medium vectors (128 elements): 1.0-1.5x faster - Large vectors (384-1536 elements): 0.9-1.0x (marginal) The Cython deserializer is automatically used by the row parser when available via find_deserializer(). Includes unit tests and benchmark code. Follow-up commits will try to get Numpy arrays, and perhaps more. Signed-off-by: Yaniv Kaul <yaniv.kaul@scylladb.com>
1 parent 4c58e06 commit e3bc7df

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Lines changed: 310 additions & 2 deletions

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cassandra/deserializers.pyx

Lines changed: 241 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -13,10 +13,11 @@
1313
# limitations under the License.
1414

1515

16-
from libc.stdint cimport int32_t, uint16_t, uint32_t
16+
from libc.stdint cimport int32_t, int64_t, int16_t, uint16_t, uint32_t
17+
from libc.string cimport memcpy
1718

1819
include 'cython_marshal.pyx'
19-
from cassandra.buffer cimport Buffer, to_bytes, slice_buffer
20+
from cassandra.buffer cimport Buffer, to_bytes, from_ptr_and_size
2021
from cassandra.cython_utils cimport datetime_from_timestamp, datetime_from_ms_timestamp
2122

2223
from cython.view cimport array as cython_array
@@ -29,6 +30,11 @@ from uuid import UUID
2930
from cassandra import cqltypes
3031
from cassandra import util
3132

33+
# Import numpy availability flag and conditionally import numpy
34+
from cassandra.cython_deps import HAVE_NUMPY
35+
if HAVE_NUMPY:
36+
import numpy as np
37+
3238
cdef class Deserializer:
3339
"""Cython-based deserializer class for a cqltype"""
3440

@@ -182,9 +188,240 @@ cdef class DesVarcharType(DesUTF8Type):
182188
pass
183189

184190

191+
#--------------------------------------------------------------------------
192+
# Vector deserialization
193+
194+
cdef inline bint _is_float_type(object subtype):
195+
return subtype is cqltypes.FloatType or issubclass(subtype, cqltypes.FloatType)
196+
197+
cdef inline bint _is_double_type(object subtype):
198+
return subtype is cqltypes.DoubleType or issubclass(subtype, cqltypes.DoubleType)
199+
200+
cdef inline bint _is_int32_type(object subtype):
201+
return subtype is cqltypes.Int32Type or issubclass(subtype, cqltypes.Int32Type)
202+
203+
cdef inline bint _is_int64_type(object subtype):
204+
return subtype is cqltypes.LongType or issubclass(subtype, cqltypes.LongType)
205+
206+
cdef inline bint _is_int16_type(object subtype):
207+
return subtype is cqltypes.ShortType or issubclass(subtype, cqltypes.ShortType)
208+
209+
cdef inline list _deserialize_numpy_vector(Buffer *buf, int vector_size, str dtype):
210+
"""Unified numpy deserialization for large vectors"""
211+
return np.frombuffer(buf.ptr[:buf.size], dtype=dtype, count=vector_size).tolist()
212+
213+
cdef class DesVectorType(Deserializer):
214+
"""
215+
Optimized Cython deserializer for VectorType.
216+
217+
For float and double vectors, uses direct memory access with C-level casting
218+
for significantly better performance than Python-level deserialization.
219+
"""
220+
221+
cdef int vector_size
222+
cdef object subtype
223+
224+
def __init__(self, cqltype):
225+
super().__init__(cqltype)
226+
self.vector_size = cqltype.vector_size
227+
self.subtype = cqltype.subtype
228+
229+
def deserialize_bytes(self, bytes data, int protocol_version):
230+
"""Python-callable wrapper for deserialize that takes bytes."""
231+
cdef Buffer buf
232+
buf.ptr = <char*>data
233+
buf.size = len(data)
234+
return self.deserialize(&buf, protocol_version)
235+
236+
cdef deserialize(self, Buffer *buf, int protocol_version):
237+
cdef int expected_size
238+
cdef int elem_size
239+
cdef bint use_numpy = HAVE_NUMPY and self.vector_size >= 32
240+
241+
# Determine element type, size, and dispatch appropriately
242+
if _is_float_type(self.subtype):
243+
elem_size = 4
244+
expected_size = self.vector_size * elem_size
245+
if buf.size == expected_size:
246+
if use_numpy:
247+
return _deserialize_numpy_vector(buf, self.vector_size, '>f4')
248+
return self._deserialize_float(buf)
249+
raise ValueError(
250+
f"Expected vector of type {self.subtype.typename} and dimension {self.vector_size} "
251+
f"to have serialized size {expected_size}; observed serialized size of {buf.size} instead")
252+
elif _is_double_type(self.subtype):
253+
elem_size = 8
254+
expected_size = self.vector_size * elem_size
255+
if buf.size == expected_size:
256+
if use_numpy:
257+
return _deserialize_numpy_vector(buf, self.vector_size, '>f8')
258+
return self._deserialize_double(buf)
259+
raise ValueError(
260+
f"Expected vector of type {self.subtype.typename} and dimension {self.vector_size} "
261+
f"to have serialized size {expected_size}; observed serialized size of {buf.size} instead")
262+
elif _is_int32_type(self.subtype):
263+
elem_size = 4
264+
expected_size = self.vector_size * elem_size
265+
if buf.size == expected_size:
266+
if use_numpy:
267+
return _deserialize_numpy_vector(buf, self.vector_size, '>i4')
268+
return self._deserialize_int32(buf)
269+
raise ValueError(
270+
f"Expected vector of type {self.subtype.typename} and dimension {self.vector_size} "
271+
f"to have serialized size {expected_size}; observed serialized size of {buf.size} instead")
272+
elif _is_int64_type(self.subtype):
273+
elem_size = 8
274+
expected_size = self.vector_size * elem_size
275+
if buf.size == expected_size:
276+
if use_numpy:
277+
return _deserialize_numpy_vector(buf, self.vector_size, '>i8')
278+
return self._deserialize_int64(buf)
279+
raise ValueError(
280+
f"Expected vector of type {self.subtype.typename} and dimension {self.vector_size} "
281+
f"to have serialized size {expected_size}; observed serialized size of {buf.size} instead")
282+
elif _is_int16_type(self.subtype):
283+
elem_size = 2
284+
expected_size = self.vector_size * elem_size
285+
if buf.size == expected_size:
286+
if use_numpy:
287+
return _deserialize_numpy_vector(buf, self.vector_size, '>i2')
288+
return self._deserialize_int16(buf)
289+
raise ValueError(
290+
f"Expected vector of type {self.subtype.typename} and dimension {self.vector_size} "
291+
f"to have serialized size {expected_size}; observed serialized size of {buf.size} instead")
292+
else:
293+
# Unsupported type, use generic deserialization
294+
return self._deserialize_generic(buf, protocol_version)
295+
296+
cdef inline list _deserialize_float(self, Buffer *buf):
297+
"""Deserialize float vector using direct C-level access with byte swapping"""
298+
cdef Py_ssize_t i
299+
cdef list result
300+
cdef float temp
301+
cdef uint32_t temp32
302+
303+
result = [None] * self.vector_size
304+
for i in range(self.vector_size):
305+
# Copy to aligned local, then convert from big-endian
306+
memcpy(&temp32, buf.ptr + i * 4, 4)
307+
temp32 = ntohl(temp32)
308+
temp = (<float*>&temp32)[0]
309+
result[i] = temp
310+
311+
return result
312+
313+
cdef inline list _deserialize_double(self, Buffer *buf):
314+
"""Deserialize double vector using direct C-level access with byte swapping"""
315+
cdef Py_ssize_t i
316+
cdef list result
317+
cdef double temp
318+
cdef char *src_bytes
319+
cdef char *out_bytes
320+
cdef int j
321+
322+
result = [None] * self.vector_size
323+
for i in range(self.vector_size):
324+
src_bytes = buf.ptr + i * 8
325+
out_bytes = <char*>&temp
326+
327+
# Swap bytes for big-endian to native conversion
328+
if is_little_endian:
329+
for j in range(8):
330+
out_bytes[7 - j] = src_bytes[j]
331+
else:
332+
memcpy(&temp, src_bytes, 8)
333+
334+
result[i] = temp
335+
336+
return result
337+
338+
cdef inline list _deserialize_int32(self, Buffer *buf):
339+
"""Deserialize int32 vector using direct C-level access with ntohl"""
340+
cdef Py_ssize_t i
341+
cdef list result
342+
cdef int32_t temp
343+
cdef uint32_t temp32
344+
345+
result = [None] * self.vector_size
346+
for i in range(self.vector_size):
347+
# Copy to aligned local, then convert from big-endian
348+
memcpy(&temp32, buf.ptr + i * 4, 4)
349+
temp = <int32_t>ntohl(temp32)
350+
result[i] = temp
351+
352+
return result
353+
354+
cdef inline list _deserialize_int64(self, Buffer *buf):
355+
"""Deserialize int64/long vector using direct C-level access with byte swapping"""
356+
cdef Py_ssize_t i
357+
cdef list result
358+
cdef int64_t temp
359+
cdef char *src_bytes
360+
cdef char *out_bytes
361+
cdef int j
362+
363+
result = [None] * self.vector_size
364+
for i in range(self.vector_size):
365+
src_bytes = buf.ptr + i * 8
366+
out_bytes = <char*>&temp
367+
368+
# Swap bytes for big-endian to native conversion
369+
if is_little_endian:
370+
for j in range(8):
371+
out_bytes[7 - j] = src_bytes[j]
372+
else:
373+
memcpy(&temp, src_bytes, 8)
374+
375+
result[i] = temp
376+
377+
return result
378+
379+
cdef inline list _deserialize_int16(self, Buffer *buf):
380+
"""Deserialize int16/short vector using direct C-level access with ntohs"""
381+
cdef Py_ssize_t i
382+
cdef list result
383+
cdef int16_t temp
384+
385+
result = [None] * self.vector_size
386+
for i in range(self.vector_size):
387+
temp = <int16_t>ntohs((<uint16_t*>(buf.ptr + i * 2))[0])
388+
result[i] = temp
389+
390+
return result
391+
392+
cdef inline list _deserialize_generic(self, Buffer *buf, int protocol_version):
393+
"""Fallback: element-by-element deserialization for non-optimized types"""
394+
cdef Py_ssize_t i
395+
cdef Buffer elem_buf
396+
cdef int offset = 0
397+
cdef list result = [None] * self.vector_size
398+
399+
_serialized_size = self.subtype.serial_size()
400+
if _serialized_size is None:
401+
raise ValueError(
402+
f"VectorType with variable-size subtype {self.subtype.typename} "
403+
"is not supported in Cython deserializer")
404+
cdef int serialized_size = <int>_serialized_size
405+
406+
# Validate total size before processing
407+
cdef int expected_size = self.vector_size * serialized_size
408+
if buf.size != expected_size:
409+
raise ValueError(
410+
f"Expected vector of type {self.subtype.typename} and dimension {self.vector_size} "
411+
f"to have serialized size {expected_size}; observed serialized size of {buf.size} instead")
412+
413+
for i in range(self.vector_size):
414+
from_ptr_and_size(buf.ptr + offset, serialized_size, &elem_buf)
415+
result[i] = self.subtype.deserialize(to_bytes(&elem_buf), protocol_version)
416+
offset += serialized_size
417+
418+
return result
419+
420+
185421

186422
cdef class _DesParameterizedType(Deserializer):
187423

424+
188425
cdef object subtypes
189426
cdef Deserializer[::1] deserializers
190427
cdef Py_ssize_t subtypes_len
@@ -511,6 +748,8 @@ cpdef Deserializer find_deserializer(cqltype):
511748
cls = DesReversedType
512749
elif issubclass(cqltype, cqltypes.FrozenType):
513750
cls = DesFrozenType
751+
elif issubclass(cqltype, cqltypes.VectorType):
752+
cls = DesVectorType
514753
else:
515754
cls = GenericDeserializer
516755

tests/unit/test_types.py

Lines changed: 69 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -525,6 +525,75 @@ def test_deserialization_variable_size_too_big(self):
525525
with pytest.raises(ValueError, match="Additional bytes remaining after vector deserialization completed"):
526526
ctype_four.deserialize(ctype_five_bytes, 0)
527527

528+
def test_vector_cython_deserializer(self):
529+
"""
530+
Test that VectorType uses the Cython DesVectorType deserializer
531+
and correctly deserializes vectors of supported numeric types.
532+
533+
@since 3.x
534+
@expected_result Cython deserializer exists and correctly deserializes vector data
535+
536+
@test_category data_types:vector
537+
"""
538+
import struct
539+
try:
540+
from cassandra.deserializers import find_deserializer
541+
except ImportError:
542+
self.skipTest("Cython deserializers not available")
543+
544+
# Test float vector
545+
vt_float = VectorType.apply_parameters(['FloatType', 4], {})
546+
des_float = find_deserializer(vt_float)
547+
self.assertEqual(des_float.__class__.__name__, 'DesVectorType')
548+
549+
data_float = struct.pack('>4f', 1.0, 2.0, 3.0, 4.0)
550+
result_float = vt_float.deserialize(data_float, 5)
551+
self.assertEqual(result_float, [1.0, 2.0, 3.0, 4.0])
552+
553+
# Test double vector
554+
from cassandra.cqltypes import DoubleType
555+
vt_double = VectorType.apply_parameters(['DoubleType', 3], {})
556+
des_double = find_deserializer(vt_double)
557+
self.assertEqual(des_double.__class__.__name__, 'DesVectorType')
558+
559+
data_double = struct.pack('>3d', 1.5, 2.5, 3.5)
560+
result_double = vt_double.deserialize(data_double, 5)
561+
self.assertEqual(result_double, [1.5, 2.5, 3.5])
562+
563+
# Test int32 vector
564+
vt_int32 = VectorType.apply_parameters(['Int32Type', 4], {})
565+
des_int32 = find_deserializer(vt_int32)
566+
self.assertEqual(des_int32.__class__.__name__, 'DesVectorType')
567+
568+
data_int32 = struct.pack('>4i', 1, 2, 3, 4)
569+
result_int32 = vt_int32.deserialize(data_int32, 5)
570+
self.assertEqual(result_int32, [1, 2, 3, 4])
571+
572+
# Test int64/long vector
573+
vt_int64 = VectorType.apply_parameters(['LongType', 2], {})
574+
des_int64 = find_deserializer(vt_int64)
575+
self.assertEqual(des_int64.__class__.__name__, 'DesVectorType')
576+
577+
data_int64 = struct.pack('>2q', 100, 200)
578+
result_int64 = vt_int64.deserialize(data_int64, 5)
579+
self.assertEqual(result_int64, [100, 200])
580+
581+
# Test int16/short vector
582+
from cassandra.cqltypes import ShortType
583+
vt_int16 = VectorType.apply_parameters(['ShortType', 3], {})
584+
des_int16 = find_deserializer(vt_int16)
585+
self.assertEqual(des_int16.__class__.__name__, 'DesVectorType')
586+
587+
data_int16 = struct.pack('>3h', 10, 20, 30)
588+
result_int16 = des_int16.deserialize_bytes(data_int16, 5)
589+
self.assertEqual(result_int16, [10, 20, 30])
590+
591+
# Test error handling: wrong buffer size
592+
with self.assertRaises(ValueError) as cm:
593+
vt_float.deserialize(struct.pack('>3f', 1.0, 2.0, 3.0), 5) # 3 floats instead of 4
594+
self.assertIn('Expected vector', str(cm.exception))
595+
self.assertIn('serialized size', str(cm.exception))
596+
528597

529598
ZERO = datetime.timedelta(0)
530599

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