Sync 2.x into master: pipeline refactor (PR-A through PR-E2) and changelog

.gitignore

@@ -4,4 +4,6 @@
 /astm_messages/
 /test_messages/
 /out/
+*.log
+*.log.*
 .python-version

docs/changelog.rst

@@ -2,9 +2,27 @@ Changelog
 =========
 
 
-1.0.0 (unreleased)
-------------------
+2.0.0
+-----
 
+- #38 Use microsecond precision in capture filenames
+- #37 HL7 v2 parser, envelope mapping, LIMS push wiring (PR-7)
+- #36 HL7-over-MLLP transport, passthrough (PR-6, HemoScreen)
+- #35 Disk capture is a first-class pipeline handler (PR-H)
+- #34 Server hardening: async main, sane log rotation, graceful shutdown (PR-G)
+- #33 Split transport from protocol semantics (PR-F)
+- #31 Migrate every instrument to the registry (PR-E2)
+- #30 Introduce the instrument registry (PR-E1)
+- #29 Make field descriptors quiet and tolerant
+- #28 Define a typed Envelope schema for Wrapper.to_dict()
+- #27 Lift LIMS push into core/ with typed errors and PushResult
+- #26 Drop Python 2 compatibility shims
+
+
+1.0.0
+-----
+
+- #25 Add test scaffold for the ASTM pipeline
 - #23 Add Cepheid GeneXpert import schema
 - #22 Add Horiba Pentra XLR import schema
 - #21 Add Biomérieux MINI VIDAS® import schema

setup.py

@@ -4,7 +4,7 @@
 from setuptools import setup
 
 
-version = "1.0.0"
+version = "2.0.0"
 
 setup(
     name="senaite.astm",
@@ -29,8 +29,9 @@
     include_package_data=True,
     zip_safe=False,
     install_requires=[
+        "hl7",
+        "pydantic>=2",
         "requests",
-        "zope.interface",
     ],
     test_suite='senaite.astm.tests',
     # List additional groups of dependencies here (e.g. development
@@ -46,9 +47,11 @@
     },
     entry_points={
         "console_scripts": [
-            "senaite-astm-server=senaite.astm.server:main",
+            "senaite-astm-server=senaite.astm.cli.astm_server:main",
             "senaite-astm-send=senaite.astm.sender:main",
             "senaite-astm-simulator=senaite.astm.simulator:main",
+            "senaite-hl7-server=senaite.astm.cli.hl7_server:main",
+            "senaite-hl7-simulator=senaite.astm.cli.hl7_simulator:main",
         ]
     }
 )

src/senaite/astm/__init__.py

@@ -3,16 +3,8 @@
 import logging
 import logging.handlers
 
-from zope.interface.registry import Components
-
 LOG_LEVEL = logging.INFO
 
 logger = logging.getLogger("senaite.astm")
 # Set the log level to LOG_LEVEL
 logger.setLevel(LOG_LEVEL)
-
-# global adapter registry
-adapter_registry = Components()
-
-# Make sure adapters are initialized *after* the adapter registry is in place!
-from senaite.astm import adapters  # noqa: F401,E402