[FIX] build with mmapped tunred off

h-2 · h-2 · commit 00355228121e · 2016-08-17T16:08:08.000+02:00
diff --git a/src/options.hpp b/src/options.hpp
@@ -104,9 +104,10 @@ struct DefaultIndexStringSpec<StringSet<TString, TSpec>>
 template <typename TDirection, typename TStorageSpec>
 struct FormattedFileContext<FormattedFile<Bam, TDirection, BlastTabular>, TStorageSpec>
 {
-    typedef StringSet<Segment<String<char, MMap<> >, InfixSegment> >   TNameStore;
-    typedef NameStoreCache<TNameStore>                                  TNameStoreCache;
-    typedef BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>     Type;
+    typedef typename DefaultIndexStringSpec<StringSet<void, void>>::Type TStringSpec; // see above
+    typedef StringSet<Segment<String<char, TStringSpec>, InfixSegment> > TNameStore;
+    typedef NameStoreCache<TNameStore>                                   TNameStoreCache;
+    typedef BamIOContext<TNameStore, TNameStoreCache, TStorageSpec>      Type;
 };
 
 }

Original file line number	Diff line number	Diff line change
`@@ -104,9 +104,10 @@ struct DefaultIndexStringSpec<StringSet<TString, TSpec>>`
`104`	`104`	`template <typename TDirection, typename TStorageSpec>`
`105`	`105`	`struct FormattedFileContext<FormattedFile<Bam, TDirection, BlastTabular>, TStorageSpec>`
`106`	`106`	`{`
`107`		`- typedef StringSet<Segment<String<char, MMap<> >, InfixSegment> > TNameStore;`
`108`		`- typedef NameStoreCache<TNameStore> TNameStoreCache;`
`109`		`- typedef BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> Type;`
	`107`	`+ typedef typename DefaultIndexStringSpec<StringSet<void, void>>::Type TStringSpec; // see above`
	`108`	`+ typedef StringSet<Segment<String<char, TStringSpec>, InfixSegment> > TNameStore;`
	`109`	`+ typedef NameStoreCache<TNameStore> TNameStoreCache;`
	`110`	`+ typedef BamIOContext<TNameStore, TNameStoreCache, TStorageSpec> Type;`
`110`	`111`	`};`
`111`	`112`
`112`	`113`	`}`