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[INTERNAL] reactivate custom fmindexconfig to see effect on stability
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Lines changed: 9 additions & 9 deletions

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src/options.hpp

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -77,17 +77,17 @@ struct SAValue<StringSet<String<Dna5, TSpec1>, TSpec2> >
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using namespace seqan;
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// Index Specs
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// struct LambdaFMIndexConfig
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// {
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// typedef size_t LengthSum;
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// typedef WaveletTree<void, WTRDConfig<LengthSum> > Bwt;
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// typedef Levels<void, LevelsRDConfig<LengthSum, Alloc<>, 1> > Sentinels;
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//
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// static const unsigned SAMPLING = 10;
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// };
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struct LambdaFMIndexConfig
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{
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typedef size_t LengthSum;
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typedef WaveletTree<void, WTRDConfig<LengthSum> > Bwt;
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typedef Levels<void, LevelsRDConfig<LengthSum, Alloc<>, 1> > Sentinels;
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static const unsigned SAMPLING = 10;
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};
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template <typename TSpec = void>
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using TFMIndex = FMIndex<TSpec>;//, LambdaFMIndexConfig>;
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using TFMIndex = FMIndex<TSpec, LambdaFMIndexConfig>;
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namespace SEQAN_NAMESPACE_MAIN
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{

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