LT-22324: move skills to .agents

Author: johnml1135

…s/atlassian-readonly-skills/REFERENCE.md …s/atlassian-readonly-skills/REFERENCE.md.github/skills/atlassian-readonly-skills/REFERENCE.md renamed to .agents/skills/atlassian-readonly-skills/REFERENCE.md .github/skills/atlassian-readonly-skills/REFERENCE.md renamed to .agents/skills/atlassian-readonly-skills/REFERENCE.md

@@ -4,6 +4,22 @@ Detailed usage examples and API documentation for read-only Jira, Confluence, an
 
 > **Note**: This is a read-only variant. For write operations (create, update, delete), use `atlassian-skills`.
 
+## Jira CLI Quick Reference
+
+Run from the repository root. The CLI uses `.agents/skills/atlassian-readonly-skills/.env` or `JIRA_*` environment variables and accepts either an issue key or a Jira browse URL.
+
+```powershell
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py issue LT-22324
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py issue LT-22324 --all-fields
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py comments LT-22324
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py attachments LT-22324
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py download-attachments LT-22324 --out Output/Jira/LT-22324
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py search "project = LT AND key = LT-22324"
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py transitions LT-22324
+```
+
+Avoid long PowerShell blocks and `python -c` for normal Jira issue work. The plain `issue` command returns a readable common field set; use `--all-fields` only when you need every Jira field. Use the writable skill only when the user explicitly requests comments, edits, transitions, or uploads.
+
 ## Configuration Modes
 
 All functions support two configuration modes:
@@ -463,12 +479,12 @@ credentials = AtlassianCredentials(
     jira_url="https://company.atlassian.net",
     jira_username="user@company.com",
     jira_api_token="jira_token_here",
-    
+
     # Confluence configuration
     confluence_url="https://company.atlassian.net/wiki",
     confluence_username="user@company.com",
     confluence_api_token="confluence_token_here",
-    
+
     # Bitbucket configuration (optional)
     bitbucket_url="https://bitbucket.company.com",
     bitbucket_pat_token="bitbucket_pat_here"
@@ -487,10 +503,10 @@ if "jira" in availability["available_services"]:
         credentials=credentials
     )
     issue = json.loads(result)
-    
+
     if not issue.get("error"):
         print(f"Issue: {issue['key']} - {issue['summary']}")
-        
+
         # Search for issues
         result = jira_search(
             jql="project = PROJ AND status = 'In Progress'",
@@ -573,23 +589,23 @@ AtlassianCredentials(
     jira_api_token: Optional[str] = None,
     jira_pat_token: Optional[str] = None,
     jira_api_version: Optional[str] = None,  # '2' or '3', auto-detected if not set
-    jira_ssl_verify: bool = False,
-    
+    jira_ssl_verify: bool = True,
+
     # Confluence
     confluence_url: Optional[str] = None,
     confluence_username: Optional[str] = None,
     confluence_api_token: Optional[str] = None,
     confluence_pat_token: Optional[str] = None,
     confluence_api_version: Optional[str] = None,
-    confluence_ssl_verify: bool = False,
-    
+    confluence_ssl_verify: bool = True,
+
     # Bitbucket
     bitbucket_url: Optional[str] = None,
     bitbucket_username: Optional[str] = None,
     bitbucket_api_token: Optional[str] = None,
     bitbucket_pat_token: Optional[str] = None,
     bitbucket_api_version: Optional[str] = None,
-    bitbucket_ssl_verify: bool = False
+    bitbucket_ssl_verify: bool = True
 )
 ```
 

…kills/atlassian-readonly-skills/SKILL.md …kills/atlassian-readonly-skills/SKILL.md.github/skills/atlassian-readonly-skills/SKILL.md renamed to .agents/skills/atlassian-readonly-skills/SKILL.md .github/skills/atlassian-readonly-skills/SKILL.md renamed to .agents/skills/atlassian-readonly-skills/SKILL.md

@@ -22,27 +22,34 @@ Read-only Python utilities for Jira, Confluence, and Bitbucket integration, supp
 - References to `jira.sil.org` URLs
 - Requests to "look up" or "check" a JIRA ticket
 
-### ⚠️ Critical: Always Use Python Scripts
+### Critical: Use the Small Python CLI First
 
 **NEVER** attempt to:
 - Browse to `jira.sil.org` URLs directly (requires authentication)
 - Use `fetch_webpage` or similar tools on JIRA URLs
 - Use GitHub issue tools for LT-* tickets
+- Build large inline PowerShell commands or quote-heavy `python -c` snippets for normal Jira work
 
-**ALWAYS** use these Python modules. The scripts are Python modules (not CLI tools), so use them via inline Python or import:
+Run commands from the repository root. For normal read-only Jira issue work, use `scripts/jira.py`; it accepts either `LT-22324` or `https://jira.sil.org/browse/LT-22324`.
 
 ```powershell
-# Get a single issue (inline Python one-liner)
-python -c "import sys; sys.path.insert(0, '.github/skills/atlassian-readonly-skills/scripts'); from jira_issues import jira_get_issue; print(jira_get_issue('LT-22382'))"
-
-# Search for issues (JQL query)
-python -c "import sys; sys.path.insert(0, '.github/skills/atlassian-readonly-skills/scripts'); from jira_search import jira_search; print(jira_search('project = LT AND status = Open'))"
-
-# Get issue workflow transitions
-python -c "import sys; sys.path.insert(0, '.github/skills/atlassian-readonly-skills/scripts'); from jira_workflow import jira_get_transitions; print(jira_get_transitions('LT-22382'))"
+# Read the sample issue
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py issue LT-22324
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py issue LT-22324 --all-fields
+
+# Review comments and attachments
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py comments LT-22324
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py attachments LT-22324
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py download-attachments LT-22324 --out Output/Jira/LT-22324
+
+# Search and workflow inspection
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py search "project = LT AND key = LT-22324"
+python .agents/skills/atlassian-readonly-skills/scripts/jira.py transitions LT-22324
 ```
 
-Use the script modules in this skill directly.
+Use the Python modules directly only when a task genuinely needs custom composition beyond the CLI. For write operations such as adding comments or uploading screenshots, switch to `atlassian-skills` and get explicit user intent before modifying Jira.
+
+By default, `issue` returns the fields agents usually need: summary, description, status, type, priority, assignee, reporter, timestamps, labels, and components. Use `--fields` for a custom field list, or `--all-fields` only when you really need every Jira field.
 
 ## Configuration
 
@@ -58,7 +65,9 @@ Set environment variables based on your deployment type. This mode is used when
 # SIL JIRA instance for LT-* tickets
 JIRA_URL=https://jira.sil.org
 # Personal Access Token - generate at: https://jira.sil.org/secure/ViewProfile.jspa → Personal Access Tokens
-JIRA_PAT_TOKEN=your_jira_pat_token_here
+JIRA_PAT_TOKEN=
+JIRA_API_VERSION=2
+JIRA_SSL_VERIFY=true
 ```
 
 #### Cloud (API Token)
@@ -82,22 +91,26 @@ Generate API tokens at: https://id.atlassian.com/manage-profile/security/api-tok
 ```bash
 # Jira Data Center
 JIRA_URL=https://jira.your-company.com
-JIRA_PAT_TOKEN=your_pat_token
+JIRA_PAT_TOKEN=
 
 # Confluence Data Center
 CONFLUENCE_URL=https://confluence.your-company.com
 CONFLUENCE_PAT_TOKEN=your_pat_token
 
-# Bitbucket Server/Data Center
-BITBUCKET_URL=https://bitbucket.your-company.com
-BITBUCKET_PAT_TOKEN=your_pat_token
+# Bitbucket Server/Data Center, only if needed
+# BITBUCKET_URL=https://bitbucket.your-company.com
+# BITBUCKET_PAT_TOKEN=
 ```
 
 > **Note**: PAT Token takes precedence if both are provided.
 
 ### Mode 2: Parameter-Based (Agent Environments)
 
-Alternatively, call the scripts in this skill directly.
+When environment variables are not available, pass credentials directly to the Python functions.
+
+```python
+from scripts._common import AtlassianCredentials, check_available_skills
+from scripts.jira_issues import jira_get_issue
 
 # Create credentials object
 credentials = AtlassianCredentials(
@@ -225,13 +238,24 @@ result = confluence_get_page(
 ### Jira Issue Management (`scripts.jira_issues`)
 
 ```python
-from scripts.jira_issues import jira_get_issue
+from scripts.jira_issues import (
+    jira_download_attachment,
+    jira_download_attachments,
+    jira_get_attachments,
+    jira_get_comments,
+    jira_get_issue,
+)
 
 # Get issue by key
 jira_get_issue(
     issue_key="PROJ-123",
     credentials=credentials  # Optional
 )
+
+# Get comments and attachments
+jira_get_comments(issue_key="PROJ-123")
+jira_get_attachments(issue_key="PROJ-123")
+jira_download_attachments(issue_key="PROJ-123", output_dir="Output/Jira/PROJ-123")
 ```
 
 ### Jira Search (`scripts.jira_search`)