From 9bdfeb1c70cbb38daf82cb1c0b9b251aeaa11eeb Mon Sep 17 00:00:00 2001 From: github-actions Date: Thu, 27 Nov 2025 03:23:17 +0000 Subject: [PATCH] Automated deployment to update containers 2025-11-27 --- quay.io/biocontainers/barbell/container.yaml | 12 ++ .../curve-curator/container.yaml | 25 +++++ .../biocontainers/daisyblast/container.yaml | 37 ++++++ quay.io/biocontainers/famus/container.yaml | 41 +++++++ quay.io/biocontainers/gmove/container.yaml | 12 ++ quay.io/biocontainers/hdmi/container.yaml | 39 +++++++ quay.io/biocontainers/igdtools/container.yaml | 17 +++ quay.io/biocontainers/kompot/container.yaml | 40 +++++++ .../biocontainers/lr_gapcloser/container.yaml | 49 ++++++++ .../biocontainers/pangbank-api/container.yaml | 26 +++++ quay.io/biocontainers/polyat/container.yaml | 16 +++ quay.io/biocontainers/sassy/container.yaml | 12 ++ quay.io/biocontainers/savont/container.yaml | 12 ++ quay.io/biocontainers/tagdust2/container.yaml | 16 +++ .../taxoniumtools/container.yaml | 31 +++++ .../biocontainers/telogator2/container.yaml | 37 ++++++ quay.io/biocontainers/tsumugi/container.yaml | 18 +++ quay.io/biocontainers/virprof/container.yaml | 45 ++++++++ quay.io/biocontainers/yasma/container.yaml | 106 ++++++++++++++++++ .../biocontainers/zipstrain/container.yaml | 37 ++++++ 20 files changed, 628 insertions(+) create mode 100644 quay.io/biocontainers/barbell/container.yaml create mode 100644 quay.io/biocontainers/curve-curator/container.yaml create mode 100644 quay.io/biocontainers/daisyblast/container.yaml create mode 100644 quay.io/biocontainers/famus/container.yaml create mode 100644 quay.io/biocontainers/gmove/container.yaml create mode 100644 quay.io/biocontainers/hdmi/container.yaml create mode 100644 quay.io/biocontainers/igdtools/container.yaml create mode 100644 quay.io/biocontainers/kompot/container.yaml create mode 100644 quay.io/biocontainers/lr_gapcloser/container.yaml create mode 100644 quay.io/biocontainers/pangbank-api/container.yaml create mode 100644 quay.io/biocontainers/polyat/container.yaml create mode 100644 quay.io/biocontainers/sassy/container.yaml create mode 100644 quay.io/biocontainers/savont/container.yaml create mode 100644 quay.io/biocontainers/tagdust2/container.yaml create mode 100644 quay.io/biocontainers/taxoniumtools/container.yaml create mode 100644 quay.io/biocontainers/telogator2/container.yaml create mode 100644 quay.io/biocontainers/tsumugi/container.yaml create mode 100644 quay.io/biocontainers/virprof/container.yaml create mode 100644 quay.io/biocontainers/yasma/container.yaml create mode 100644 quay.io/biocontainers/zipstrain/container.yaml diff --git a/quay.io/biocontainers/barbell/container.yaml b/quay.io/biocontainers/barbell/container.yaml new file mode 100644 index 0000000000000..818caf5156621 --- /dev/null +++ b/quay.io/biocontainers/barbell/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/barbell +maintainer: '@vsoch' +description: singularity registry hpc automated addition for barbell +latest: + 0.3.0--hc1c3326_0: + sha256:ad9b13a629725e52188f31a0f1f84eeb7c8ad3b67d32c5443f52bc57da815fb7 +tags: + 0.3.0--hc1c3326_0: + sha256:ad9b13a629725e52188f31a0f1f84eeb7c8ad3b67d32c5443f52bc57da815fb7 +docker: quay.io/biocontainers/barbell +aliases: + barbell: /usr/local/bin/barbell diff --git a/quay.io/biocontainers/curve-curator/container.yaml b/quay.io/biocontainers/curve-curator/container.yaml new file mode 100644 index 0000000000000..9982d50ee7ff5 --- /dev/null +++ b/quay.io/biocontainers/curve-curator/container.yaml @@ -0,0 +1,25 @@ +url: https://biocontainers.pro/tools/curve-curator +maintainer: '@vsoch' +description: singularity registry hpc automated addition for curve-curator +latest: + 0.6.0--pyhdfd78af_0: + sha256:a081a00c8a02b7a77a612d995da6dc5bd8fac277e8855b156b181d50d3ef6c86 +tags: + 0.6.0--pyhdfd78af_0: + sha256:a081a00c8a02b7a77a612d995da6dc5bd8fac277e8855b156b181d50d3ef6c86 +docker: quay.io/biocontainers/curve-curator +aliases: + CurveCurator: /usr/local/bin/CurveCurator + bokeh: /usr/local/bin/bokeh + py.test: /usr/local/bin/py.test + pytest: /usr/local/bin/pytest + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config + tqdm: /usr/local/bin/tqdm + tjbench: /usr/local/bin/tjbench + opj_compress: /usr/local/bin/opj_compress + opj_decompress: /usr/local/bin/opj_decompress + opj_dump: /usr/local/bin/opj_dump diff --git a/quay.io/biocontainers/daisyblast/container.yaml b/quay.io/biocontainers/daisyblast/container.yaml new file mode 100644 index 0000000000000..e11f618a737d1 --- /dev/null +++ b/quay.io/biocontainers/daisyblast/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/daisyblast +maintainer: '@vsoch' +description: singularity registry hpc automated addition for daisyblast +latest: + 0.2.0--pyhdfd78af_0: + sha256:17e0cb6e9c2c5293eb2e74a14604082df007abef065a2482e51e4524fff803bf +tags: + 0.2.0--pyhdfd78af_0: + sha256:17e0cb6e9c2c5293eb2e74a14604082df007abef065a2482e51e4524fff803bf +docker: quay.io/biocontainers/daisyblast +aliases: + daisyblast: /usr/local/bin/daisyblast + archive-nlmnlp: /usr/local/bin/archive-nlmnlp + archive-pids: /usr/local/bin/archive-pids + download-flatfile: /usr/local/bin/download-flatfile + ecollect: /usr/local/bin/ecollect + gbf2facds: /usr/local/bin/gbf2facds + gbf2tbl: /usr/local/bin/gbf2tbl + gff-sort: /usr/local/bin/gff-sort + gff2xml: /usr/local/bin/gff2xml + pair-at-a-time: /usr/local/bin/pair-at-a-time + print-missing-subranges: /usr/local/bin/print-missing-subranges + sort-by-length: /usr/local/bin/sort-by-length + xcommon.sh: /usr/local/bin/xcommon.sh + xfetch: /usr/local/bin/xfetch + xfetch.ini: /usr/local/bin/xfetch.ini + xfilter: /usr/local/bin/xfilter + xinfo: /usr/local/bin/xinfo + xlink: /usr/local/bin/xlink + xlink.ini: /usr/local/bin/xlink.ini + xsearch: /usr/local/bin/xsearch + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + bsmp2info: /usr/local/bin/bsmp2info + fsa2xml: /usr/local/bin/fsa2xml diff --git a/quay.io/biocontainers/famus/container.yaml b/quay.io/biocontainers/famus/container.yaml new file mode 100644 index 0000000000000..426b75473ccd9 --- /dev/null +++ b/quay.io/biocontainers/famus/container.yaml @@ -0,0 +1,41 @@ +url: https://biocontainers.pro/tools/famus +maintainer: '@vsoch' +description: singularity registry hpc automated addition for famus +latest: + 0.1.1--py312hdfd78af_0: + sha256:abe49d43af48f2cc40ab4f6187b92585a7fbf92dddf5120d47b8aaa0f0bc8000 +tags: + 0.1.1--py312hdfd78af_0: + sha256:abe49d43af48f2cc40ab4f6187b92585a7fbf92dddf5120d47b8aaa0f0bc8000 +docker: quay.io/biocontainers/famus +aliases: + famus-classify: /usr/local/bin/famus-classify + famus-convert-sdf: /usr/local/bin/famus-convert-sdf + famus-defaults: /usr/local/bin/famus-defaults + famus-install: /usr/local/bin/famus-install + famus-train: /usr/local/bin/famus-train + gawk-5.3.1: /usr/local/bin/gawk-5.3.1 + aria2c: /usr/local/bin/aria2c + seqkit: /usr/local/bin/seqkit + mmseqs: /usr/local/bin/mmseqs + gawkbug: /usr/local/bin/gawkbug + shmemrun: /usr/local/bin/shmemrun + oshCC: /usr/local/bin/oshCC + oshc++: /usr/local/bin/oshc++ + oshcxx: /usr/local/bin/oshcxx + shmemCC: /usr/local/bin/shmemCC + shmemc++: /usr/local/bin/shmemc++ + shmemcxx: /usr/local/bin/shmemcxx + oshcc: /usr/local/bin/oshcc + oshfort: /usr/local/bin/oshfort + oshmem_info: /usr/local/bin/oshmem_info + oshrun: /usr/local/bin/oshrun + shmemcc: /usr/local/bin/shmemcc + shmemfort: /usr/local/bin/shmemfort + aggregate_profile.pl: /usr/local/bin/aggregate_profile.pl + profile2mat.pl: /usr/local/bin/profile2mat.pl + ompi-clean: /usr/local/bin/ompi-clean + ompi-server: /usr/local/bin/ompi-server + orte-clean: /usr/local/bin/orte-clean + orte-info: /usr/local/bin/orte-info + orte-server: /usr/local/bin/orte-server diff --git a/quay.io/biocontainers/gmove/container.yaml b/quay.io/biocontainers/gmove/container.yaml new file mode 100644 index 0000000000000..52f71534a5f9c --- /dev/null +++ b/quay.io/biocontainers/gmove/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/gmove +maintainer: '@vsoch' +description: singularity registry hpc automated addition for gmove +latest: + 1.3--h9948957_0: + sha256:2b00cfc135aaa36fb4e7c1a713d74b5e714e257053b2da97e35c4541cc99c3a4 +tags: + 1.3--h9948957_0: + sha256:2b00cfc135aaa36fb4e7c1a713d74b5e714e257053b2da97e35c4541cc99c3a4 +docker: quay.io/biocontainers/gmove +aliases: + gmove: /usr/local/bin/gmove diff --git a/quay.io/biocontainers/hdmi/container.yaml b/quay.io/biocontainers/hdmi/container.yaml new file mode 100644 index 0000000000000..617de55c076fb --- /dev/null +++ b/quay.io/biocontainers/hdmi/container.yaml @@ -0,0 +1,39 @@ +url: https://biocontainers.pro/tools/hdmi +maintainer: '@vsoch' +description: singularity registry hpc automated addition for hdmi +latest: + 1.0.0--pyhdfd78af_0: + sha256:583630a573e8aa537af939772fdd50d47fb6fa9112777126aa334063fe1bf846 +tags: + 1.0.0--pyhdfd78af_0: + sha256:583630a573e8aa537af939772fdd50d47fb6fa9112777126aa334063fe1bf846 +docker: quay.io/biocontainers/hdmi +aliases: + HDMI: /usr/local/bin/HDMI + HDMI.py: /usr/local/bin/HDMI.py + hdmi: /usr/local/bin/hdmi + archive-nlmnlp: /usr/local/bin/archive-nlmnlp + archive-pids: /usr/local/bin/archive-pids + download-flatfile: /usr/local/bin/download-flatfile + ecollect: /usr/local/bin/ecollect + gbf2facds: /usr/local/bin/gbf2facds + gbf2tbl: /usr/local/bin/gbf2tbl + gff-sort: /usr/local/bin/gff-sort + gff2xml: /usr/local/bin/gff2xml + pair-at-a-time: /usr/local/bin/pair-at-a-time + print-missing-subranges: /usr/local/bin/print-missing-subranges + sort-by-length: /usr/local/bin/sort-by-length + xcommon.sh: /usr/local/bin/xcommon.sh + xfetch: /usr/local/bin/xfetch + xfetch.ini: /usr/local/bin/xfetch.ini + xfilter: /usr/local/bin/xfilter + xinfo: /usr/local/bin/xinfo + xlink: /usr/local/bin/xlink + xlink.ini: /usr/local/bin/xlink.ini + xsearch: /usr/local/bin/xsearch + ref-cache: /usr/local/bin/ref-cache + bsmp2info: /usr/local/bin/bsmp2info + fsa2xml: /usr/local/bin/fsa2xml + gbf2info: /usr/local/bin/gbf2info + just-top-hits: /usr/local/bin/just-top-hits + systematic-mutations: /usr/local/bin/systematic-mutations diff --git a/quay.io/biocontainers/igdtools/container.yaml b/quay.io/biocontainers/igdtools/container.yaml new file mode 100644 index 0000000000000..ed1c0bfb579a6 --- /dev/null +++ b/quay.io/biocontainers/igdtools/container.yaml @@ -0,0 +1,17 @@ +url: https://biocontainers.pro/tools/igdtools +maintainer: '@vsoch' +description: singularity registry hpc automated addition for igdtools +latest: + 2.6--py310h275bdba_0: + sha256:37ee10a1fb2f841fb6334d4da3b22dffc41fef28b11e7a92b2c969b318fd6963 +tags: + 2.6--py310h275bdba_0: + sha256:37ee10a1fb2f841fb6334d4da3b22dffc41fef28b11e7a92b2c969b318fd6963 +docker: quay.io/biocontainers/igdtools +aliases: + igdtools: /usr/local/bin/igdtools + 2to3-3.10: /usr/local/bin/2to3-3.10 + idle3.10: /usr/local/bin/idle3.10 + pydoc3.10: /usr/local/bin/pydoc3.10 + python3.10: /usr/local/bin/python3.10 + python3.10-config: /usr/local/bin/python3.10-config diff --git a/quay.io/biocontainers/kompot/container.yaml b/quay.io/biocontainers/kompot/container.yaml new file mode 100644 index 0000000000000..b4c2683f822ca --- /dev/null +++ b/quay.io/biocontainers/kompot/container.yaml @@ -0,0 +1,40 @@ +url: https://biocontainers.pro/tools/kompot +maintainer: '@vsoch' +description: singularity registry hpc automated addition for kompot +latest: + 0.6.0--pyhdfd78af_0: + sha256:b37b831125a71daeee386938332f95d8b4ca6ca1f0f1ea152e309f70be809285 +tags: + 0.6.0--pyhdfd78af_0: + sha256:b37b831125a71daeee386938332f95d8b4ca6ca1f0f1ea152e309f70be809285 +docker: quay.io/biocontainers/kompot +aliases: + crc32c: /usr/local/bin/crc32c + kompot: /usr/local/bin/kompot + mellon-test: /usr/local/bin/mellon-test + zarr: /usr/local/bin/zarr + protoc-31.1.0: /usr/local/bin/protoc-31.1.0 + protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0 + protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0 + protoc-gen-upb: /usr/local/bin/protoc-gen-upb + protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs + h5fuse: /usr/local/bin/h5fuse + igraph: /usr/local/bin/igraph + qconvex: /usr/local/bin/qconvex + qdelaunay: /usr/local/bin/qdelaunay + qhalf: /usr/local/bin/qhalf + qhull: /usr/local/bin/qhull + qvoronoi: /usr/local/bin/qvoronoi + rbox: /usr/local/bin/rbox + h5delete: /usr/local/bin/h5delete + natsort: /usr/local/bin/natsort + numba: /usr/local/bin/numba + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + grpc_cpp_plugin: /usr/local/bin/grpc_cpp_plugin + grpc_csharp_plugin: /usr/local/bin/grpc_csharp_plugin + grpc_node_plugin: /usr/local/bin/grpc_node_plugin + grpc_objective_c_plugin: /usr/local/bin/grpc_objective_c_plugin + grpc_php_plugin: /usr/local/bin/grpc_php_plugin diff --git a/quay.io/biocontainers/lr_gapcloser/container.yaml b/quay.io/biocontainers/lr_gapcloser/container.yaml new file mode 100644 index 0000000000000..14e69b20c971f --- /dev/null +++ b/quay.io/biocontainers/lr_gapcloser/container.yaml @@ -0,0 +1,49 @@ +url: https://biocontainers.pro/tools/lr_gapcloser +maintainer: '@vsoch' +description: singularity registry hpc automated addition for lr_gapcloser +latest: + 1.0--pl5321hdfd78af_0: + sha256:58f8b2c747066be261e3366e98349be0190f8d7ac107e9ee33e639aee407c4af +tags: + 1.0--pl5321hdfd78af_0: + sha256:58f8b2c747066be261e3366e98349be0190f8d7ac107e9ee33e639aee407c4af +docker: quay.io/biocontainers/lr_gapcloser +aliases: + LR_Gapcloser.sh: /usr/local/bin/LR_Gapcloser.sh + best-match-LR.pl: /usr/local/bin/best-match-LR.pl + block_align.pl: /usr/local/bin/block_align.pl + change_case_fasta.pl: /usr/local/bin/change_case_fasta.pl + complete_retriver.pl: /usr/local/bin/complete_retriver.pl + complete_substitute_limiter.pl: /usr/local/bin/complete_substitute_limiter.pl + complete_ultimate_elect.pl: /usr/local/bin/complete_ultimate_elect.pl + coverage_calculator.pl: /usr/local/bin/coverage_calculator.pl + coverage_filter.pl: /usr/local/bin/coverage_filter.pl + find_sequnce_file.pl: /usr/local/bin/find_sequnce_file.pl + form_sequence.pl: /usr/local/bin/form_sequence.pl + format_fa.pl: /usr/local/bin/format_fa.pl + further_partial_select.pl: /usr/local/bin/further_partial_select.pl + gap_bridging.pl: /usr/local/bin/gap_bridging.pl + gap_finder.pl: /usr/local/bin/gap_finder.pl + group_partial.pl: /usr/local/bin/group_partial.pl + info_formatter.pl: /usr/local/bin/info_formatter.pl + info_pacify.pl: /usr/local/bin/info_pacify.pl + join_LRlength.pl: /usr/local/bin/join_LRlength.pl + last_Drepeat.pl: /usr/local/bin/last_Drepeat.pl + partial_ultimate_elect.pl: /usr/local/bin/partial_ultimate_elect.pl + remove_wrong3.pl: /usr/local/bin/remove_wrong3.pl + retrieve-unique-alignment.pl: /usr/local/bin/retrieve-unique-alignment.pl + retriever_backfill.pl: /usr/local/bin/retriever_backfill.pl + same_filter.pl: /usr/local/bin/same_filter.pl + tag_alignment_filter.pl: /usr/local/bin/tag_alignment_filter.pl + tag_distance_filter_classify.pl: + /usr/local/bin/tag_distance_filter_classify.pl + tag_generator.pl: /usr/local/bin/tag_generator.pl + tag_orientation_corrector.pl: /usr/local/bin/tag_orientation_corrector.pl + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + qualfa2fq.pl: /usr/local/bin/qualfa2fq.pl + xa2multi.pl: /usr/local/bin/xa2multi.pl + sdust: /usr/local/bin/sdust + bwa: /usr/local/bin/bwa + paftools.js: /usr/local/bin/paftools.js + k8: /usr/local/bin/k8 + minimap2: /usr/local/bin/minimap2 diff --git a/quay.io/biocontainers/pangbank-api/container.yaml b/quay.io/biocontainers/pangbank-api/container.yaml new file mode 100644 index 0000000000000..359b9955aa072 --- /dev/null +++ b/quay.io/biocontainers/pangbank-api/container.yaml @@ -0,0 +1,26 @@ +url: https://biocontainers.pro/tools/pangbank-api +maintainer: '@vsoch' +description: singularity registry hpc automated addition for pangbank-api +latest: + 0.1.2--pyhdfd78af_0: + sha256:f55ba8e5e551ad24359f5329e9dee5f281c0c0ac617477287f6e954683fd2c1d +tags: + 0.1.2--pyhdfd78af_0: + sha256:f55ba8e5e551ad24359f5329e9dee5f281c0c0ac617477287f6e954683fd2c1d +docker: quay.io/biocontainers/pangbank-api +aliases: + email_validator: /usr/local/bin/email_validator + fastapi: /usr/local/bin/fastapi + pangbank_db: /usr/local/bin/pangbank_db + uvicorn: /usr/local/bin/uvicorn + watchfiles: /usr/local/bin/watchfiles + websockets: /usr/local/bin/websockets + dotenv: /usr/local/bin/dotenv + typer: /usr/local/bin/typer + httpx: /usr/local/bin/httpx + markdown-it: /usr/local/bin/markdown-it + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + pygmentize: /usr/local/bin/pygmentize diff --git a/quay.io/biocontainers/polyat/container.yaml b/quay.io/biocontainers/polyat/container.yaml new file mode 100644 index 0000000000000..954d9f3734e1a --- /dev/null +++ b/quay.io/biocontainers/polyat/container.yaml @@ -0,0 +1,16 @@ +url: https://biocontainers.pro/tools/polyat +maintainer: '@vsoch' +description: singularity registry hpc automated addition for polyat +latest: + 0.1.2--pyhdfd78af_0: + sha256:b14dc249ab0c24c763b5268de71dd265f2a57e6e9b95268201bfc6663445e800 +tags: + 0.1.2--pyhdfd78af_0: + sha256:b14dc249ab0c24c763b5268de71dd265f2a57e6e9b95268201bfc6663445e800 +docker: quay.io/biocontainers/polyat +aliases: + polyat: /usr/local/bin/polyat + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config diff --git a/quay.io/biocontainers/sassy/container.yaml b/quay.io/biocontainers/sassy/container.yaml new file mode 100644 index 0000000000000..0bc0be29116bd --- /dev/null +++ b/quay.io/biocontainers/sassy/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/sassy +maintainer: '@vsoch' +description: singularity registry hpc automated addition for sassy +latest: + 0.1.8--h4349ce8_0: + sha256:fc0d405bac26d99f5256ca822af4e085285fa68d8b2e873fd6562058d865aeab +tags: + 0.1.8--h4349ce8_0: + sha256:fc0d405bac26d99f5256ca822af4e085285fa68d8b2e873fd6562058d865aeab +docker: quay.io/biocontainers/sassy +aliases: + sassy: /usr/local/bin/sassy diff --git a/quay.io/biocontainers/savont/container.yaml b/quay.io/biocontainers/savont/container.yaml new file mode 100644 index 0000000000000..896043e5272dd --- /dev/null +++ b/quay.io/biocontainers/savont/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/savont +maintainer: '@vsoch' +description: singularity registry hpc automated addition for savont +latest: + 0.1.0--ha6fb395_0: + sha256:ed450e9088ca08e176f238e97befa900b313693de8108c95865f7026ccd70ba8 +tags: + 0.1.0--ha6fb395_0: + sha256:ed450e9088ca08e176f238e97befa900b313693de8108c95865f7026ccd70ba8 +docker: quay.io/biocontainers/savont +aliases: + savont: /usr/local/bin/savont diff --git a/quay.io/biocontainers/tagdust2/container.yaml b/quay.io/biocontainers/tagdust2/container.yaml new file mode 100644 index 0000000000000..5dc212463925d --- /dev/null +++ b/quay.io/biocontainers/tagdust2/container.yaml @@ -0,0 +1,16 @@ +url: https://biocontainers.pro/tools/tagdust2 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for tagdust2 +latest: + 2.33.1--h503566f_0: + sha256:ec917d64096166ef79c397ffea1ace92c481db0a64808aef5553d59eebc75f46 +tags: + 2.33.1--h503566f_0: + sha256:ec917d64096166ef79c397ffea1ace92c481db0a64808aef5553d59eebc75f46 +docker: quay.io/biocontainers/tagdust2 +aliases: + evalres: /usr/local/bin/evalres + merge: /usr/local/bin/merge + rename_qiime: /usr/local/bin/rename_qiime + simreads: /usr/local/bin/simreads + tagdust: /usr/local/bin/tagdust diff --git a/quay.io/biocontainers/taxoniumtools/container.yaml b/quay.io/biocontainers/taxoniumtools/container.yaml new file mode 100644 index 0000000000000..571b7a872bd8c --- /dev/null +++ b/quay.io/biocontainers/taxoniumtools/container.yaml @@ -0,0 +1,31 @@ +url: https://biocontainers.pro/tools/taxoniumtools +maintainer: '@vsoch' +description: singularity registry hpc automated addition for taxoniumtools +latest: + 2.1.17--pyhdfd78af_0: + sha256:12b17365885e385707f487c4a87c36f59e3c3ceb2393d477006dc34a624c52d7 +tags: + 2.1.17--pyhdfd78af_0: + sha256:12b17365885e385707f487c4a87c36f59e3c3ceb2393d477006dc34a624c52d7 +docker: quay.io/biocontainers/taxoniumtools +aliases: + inv: /usr/local/bin/inv + invoke: /usr/local/bin/invoke + newick_to_taxonium: /usr/local/bin/newick_to_taxonium + usher_to_taxonium: /usr/local/bin/usher_to_taxonium + view_taxonium: /usr/local/bin/view_taxonium + wsdump: /usr/local/bin/wsdump + pyrsa-decrypt: /usr/local/bin/pyrsa-decrypt + pyrsa-encrypt: /usr/local/bin/pyrsa-encrypt + pyrsa-keygen: /usr/local/bin/pyrsa-keygen + pyrsa-priv2pub: /usr/local/bin/pyrsa-priv2pub + pyrsa-sign: /usr/local/bin/pyrsa-sign + pyrsa-verify: /usr/local/bin/pyrsa-verify + numpy-config: /usr/local/bin/numpy-config + 2to3-3.11: /usr/local/bin/2to3-3.11 + idle3.11: /usr/local/bin/idle3.11 + pydoc3.11: /usr/local/bin/pydoc3.11 + python3.11: /usr/local/bin/python3.11 + python3.11-config: /usr/local/bin/python3.11-config + protoc: /usr/local/bin/protoc + normalizer: /usr/local/bin/normalizer diff --git a/quay.io/biocontainers/telogator2/container.yaml b/quay.io/biocontainers/telogator2/container.yaml new file mode 100644 index 0000000000000..2523f6501984b --- /dev/null +++ b/quay.io/biocontainers/telogator2/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/telogator2 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for telogator2 +latest: + 2.2.2--pyhdfd78af_0: + sha256:001b2ec84ce9b44b253fdce159c4355892fac40b33371ab427b003eba1e502b6 +tags: + 2.2.2--pyhdfd78af_0: + sha256:001b2ec84ce9b44b253fdce159c4355892fac40b33371ab427b003eba1e502b6 +docker: quay.io/biocontainers/telogator2 +aliases: + telogator2: /usr/local/bin/telogator2 + qconvex: /usr/local/bin/qconvex + qdelaunay: /usr/local/bin/qdelaunay + qhalf: /usr/local/bin/qhalf + qhull: /usr/local/bin/qhull + qvoronoi: /usr/local/bin/qvoronoi + rbox: /usr/local/bin/rbox + sdust: /usr/local/bin/sdust + paftools.js: /usr/local/bin/paftools.js + k8: /usr/local/bin/k8 + minimap2: /usr/local/bin/minimap2 + numpy-config: /usr/local/bin/numpy-config + fonttools: /usr/local/bin/fonttools + pyftmerge: /usr/local/bin/pyftmerge + pyftsubset: /usr/local/bin/pyftsubset + ttx: /usr/local/bin/ttx + brotli: /usr/local/bin/brotli + tjbench: /usr/local/bin/tjbench + opj_compress: /usr/local/bin/opj_compress + opj_decompress: /usr/local/bin/opj_decompress + opj_dump: /usr/local/bin/opj_dump + 2to3-3.10: /usr/local/bin/2to3-3.10 + idle3.10: /usr/local/bin/idle3.10 + pydoc3.10: /usr/local/bin/pydoc3.10 + python3.10: /usr/local/bin/python3.10 + python3.10-config: /usr/local/bin/python3.10-config diff --git a/quay.io/biocontainers/tsumugi/container.yaml b/quay.io/biocontainers/tsumugi/container.yaml new file mode 100644 index 0000000000000..41779d769d0e3 --- /dev/null +++ b/quay.io/biocontainers/tsumugi/container.yaml @@ -0,0 +1,18 @@ +url: https://biocontainers.pro/tools/tsumugi +maintainer: '@vsoch' +description: singularity registry hpc automated addition for tsumugi +latest: + 0.5.0--pyhdfd78af_0: + sha256:d021114f7f607dc3ae75227f0f53046525c57c63ffa1c209a1793fdee766147d +tags: + 0.5.0--pyhdfd78af_0: + sha256:d021114f7f607dc3ae75227f0f53046525c57c63ffa1c209a1793fdee766147d +docker: quay.io/biocontainers/tsumugi +aliases: + tsumugi: /usr/local/bin/tsumugi + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + numpy-config: /usr/local/bin/numpy-config + tqdm: /usr/local/bin/tqdm diff --git a/quay.io/biocontainers/virprof/container.yaml b/quay.io/biocontainers/virprof/container.yaml new file mode 100644 index 0000000000000..ffdce445c7de4 --- /dev/null +++ b/quay.io/biocontainers/virprof/container.yaml @@ -0,0 +1,45 @@ +url: https://biocontainers.pro/tools/virprof +maintainer: '@vsoch' +description: singularity registry hpc automated addition for virprof +latest: + 0.9.2--pyhdfd78af_0: + sha256:3da4c300ac3ecdb5c6c128ca2630d5464bc75b281c91009f88778647a925f24e +tags: + 0.9.2--pyhdfd78af_0: + sha256:3da4c300ac3ecdb5c6c128ca2630d5464bc75b281c91009f88778647a925f24e +docker: quay.io/biocontainers/virprof +aliases: + distro: /usr/local/bin/distro + inv: /usr/local/bin/inv + invoke: /usr/local/bin/invoke + menuinst: /usr/local/bin/menuinst + phc: /usr/local/bin/phc + prc_write_irodsA.py: /usr/local/bin/prc_write_irodsA.py + setuptools-scm: /usr/local/bin/setuptools-scm + virprof: /usr/local/bin/virprof + ymp: /usr/local/bin/ymp + jsondiff: /usr/local/bin/jsondiff + jsonpatch: /usr/local/bin/jsonpatch + protoc-31.1.0: /usr/local/bin/protoc-31.1.0 + protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0 + protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0 + jsonpointer: /usr/local/bin/jsonpointer + archspec: /usr/local/bin/archspec + eido: /usr/local/bin/eido + mamba-package: /usr/local/bin/mamba-package + mamba: /usr/local/bin/mamba + runxlrd.py: /usr/local/bin/runxlrd.py + bsdunzip: /usr/local/bin/bsdunzip + conda2solv: /usr/local/bin/conda2solv + dumpsolv: /usr/local/bin/dumpsolv + installcheck: /usr/local/bin/installcheck + mergesolv: /usr/local/bin/mergesolv + repo2solv: /usr/local/bin/repo2solv + testsolv: /usr/local/bin/testsolv + typer: /usr/local/bin/typer + protoc-gen-upb: /usr/local/bin/protoc-gen-upb + protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs + conda-env: /usr/local/bin/conda-env + cph: /usr/local/bin/cph + rst2html: /usr/local/bin/rst2html + rst2html4: /usr/local/bin/rst2html4 diff --git a/quay.io/biocontainers/yasma/container.yaml b/quay.io/biocontainers/yasma/container.yaml new file mode 100644 index 0000000000000..6a4a1c46d0282 --- /dev/null +++ b/quay.io/biocontainers/yasma/container.yaml @@ -0,0 +1,106 @@ +url: https://biocontainers.pro/tools/yasma +maintainer: '@vsoch' +description: singularity registry hpc automated addition for yasma +latest: + 1.0.1--pyh7e72e81_0: + sha256:2649d68b075c5e5f5c29b3be97b2f8f6568343204e5a02dd555f4978a215be4f +tags: + 1.0.1--pyh7e72e81_0: + sha256:2649d68b075c5e5f5c29b3be97b2f8f6568343204e5a02dd555f4978a215be4f +docker: quay.io/biocontainers/yasma +aliases: + RNAconsensus: /usr/local/bin/RNAconsensus + abi-dump.3: /usr/local/bin/abi-dump.3 + abi-dump.3.2.1: /usr/local/bin/abi-dump.3.2.1 + align-info.3: /usr/local/bin/align-info.3 + align-info.3.2.1: /usr/local/bin/align-info.3.2.1 + cache-mgr.3: /usr/local/bin/cache-mgr.3 + cache-mgr.3.2.1: /usr/local/bin/cache-mgr.3.2.1 + check-corrupt: /usr/local/bin/check-corrupt + check-corrupt.3: /usr/local/bin/check-corrupt.3 + check-corrupt.3.2.1: /usr/local/bin/check-corrupt.3.2.1 + fasterq-dump-orig.3.2.1: /usr/local/bin/fasterq-dump-orig.3.2.1 + fasterq-dump.3: /usr/local/bin/fasterq-dump.3 + fasterq-dump.3.2.1: /usr/local/bin/fasterq-dump.3.2.1 + fastq-dump-orig.3.2.1: /usr/local/bin/fastq-dump-orig.3.2.1 + fastq-dump.3: /usr/local/bin/fastq-dump.3 + fastq-dump.3.2.1: /usr/local/bin/fastq-dump.3.2.1 + illumina-dump.3: /usr/local/bin/illumina-dump.3 + illumina-dump.3.2.1: /usr/local/bin/illumina-dump.3.2.1 + kdbmeta.3: /usr/local/bin/kdbmeta.3 + kdbmeta.3.2.1: /usr/local/bin/kdbmeta.3.2.1 + ngs-pileup: /usr/local/bin/ngs-pileup + ngs-pileup.3: /usr/local/bin/ngs-pileup.3 + ngs-pileup.3.2.1: /usr/local/bin/ngs-pileup.3.2.1 + prefetch-orig.3.2.1: /usr/local/bin/prefetch-orig.3.2.1 + prefetch.3: /usr/local/bin/prefetch.3 + prefetch.3.2.1: /usr/local/bin/prefetch.3.2.1 + pypprint: /usr/local/bin/pypprint + rcexplain.3: /usr/local/bin/rcexplain.3 + rcexplain.3.2.1: /usr/local/bin/rcexplain.3.2.1 + ref-variation: /usr/local/bin/ref-variation + ref-variation.3: /usr/local/bin/ref-variation.3 + ref-variation.3.2.1: /usr/local/bin/ref-variation.3.2.1 + sam-dump-orig.3.2.1: /usr/local/bin/sam-dump-orig.3.2.1 + sam-dump.3: /usr/local/bin/sam-dump.3 + sam-dump.3.2.1: /usr/local/bin/sam-dump.3.2.1 + sff-dump.3: /usr/local/bin/sff-dump.3 + sff-dump.3.2.1: /usr/local/bin/sff-dump.3.2.1 + sra-info: /usr/local/bin/sra-info + sra-info.3: /usr/local/bin/sra-info.3 + sra-info.3.2.1: /usr/local/bin/sra-info.3.2.1 + sra-pileup-orig.3.2.1: /usr/local/bin/sra-pileup-orig.3.2.1 + sra-pileup.3: /usr/local/bin/sra-pileup.3 + sra-pileup.3.2.1: /usr/local/bin/sra-pileup.3.2.1 + sra-search: /usr/local/bin/sra-search + sra-search.3: /usr/local/bin/sra-search.3 + sra-search.3.2.1: /usr/local/bin/sra-search.3.2.1 + sra-stat.3: /usr/local/bin/sra-stat.3 + sra-stat.3.2.1: /usr/local/bin/sra-stat.3.2.1 + srapath-orig.3.2.1: /usr/local/bin/srapath-orig.3.2.1 + srapath.3: /usr/local/bin/srapath.3 + srapath.3.2.1: /usr/local/bin/srapath.3.2.1 + sratools.3: /usr/local/bin/sratools.3 + sratools.3.2.1: /usr/local/bin/sratools.3.2.1 + test-sra.3: /usr/local/bin/test-sra.3 + test-sra.3.2.1: /usr/local/bin/test-sra.3.2.1 + var-expand: /usr/local/bin/var-expand + var-expand.3: /usr/local/bin/var-expand.3 + var-expand.3.2.1: /usr/local/bin/var-expand.3.2.1 + vdb-config.3: /usr/local/bin/vdb-config.3 + vdb-config.3.2.1: /usr/local/bin/vdb-config.3.2.1 + vdb-decrypt.3: /usr/local/bin/vdb-decrypt.3 + vdb-decrypt.3.2.1: /usr/local/bin/vdb-decrypt.3.2.1 + vdb-dump-orig.3.2.1: /usr/local/bin/vdb-dump-orig.3.2.1 + vdb-dump.3: /usr/local/bin/vdb-dump.3 + vdb-dump.3.2.1: /usr/local/bin/vdb-dump.3.2.1 + vdb-encrypt.3: /usr/local/bin/vdb-encrypt.3 + vdb-encrypt.3.2.1: /usr/local/bin/vdb-encrypt.3.2.1 + vdb-validate.3: /usr/local/bin/vdb-validate.3 + vdb-validate.3.2.1: /usr/local/bin/vdb-validate.3.2.1 + yasma: /usr/local/bin/yasma + fasterq-dump-orig: /usr/local/bin/fasterq-dump-orig + fastq-dump-orig: /usr/local/bin/fastq-dump-orig + prefetch-orig: /usr/local/bin/prefetch-orig + sam-dump-orig: /usr/local/bin/sam-dump-orig + sra-pileup-orig: /usr/local/bin/sra-pileup-orig + srapath-orig: /usr/local/bin/srapath-orig + sratools: /usr/local/bin/sratools + abi-dump: /usr/local/bin/abi-dump + align-info: /usr/local/bin/align-info + cache-mgr: /usr/local/bin/cache-mgr + fasterq-dump: /usr/local/bin/fasterq-dump + fastq-dump: /usr/local/bin/fastq-dump + illumina-dump: /usr/local/bin/illumina-dump + kdbmeta: /usr/local/bin/kdbmeta + prefetch: /usr/local/bin/prefetch + rcexplain: /usr/local/bin/rcexplain + sam-dump: /usr/local/bin/sam-dump + sff-dump: /usr/local/bin/sff-dump + sra-pileup: /usr/local/bin/sra-pileup + sra-stat: /usr/local/bin/sra-stat + srapath: /usr/local/bin/srapath + test-sra: /usr/local/bin/test-sra + vdb-config: /usr/local/bin/vdb-config + vdb-decrypt: /usr/local/bin/vdb-decrypt + vdb-dump: /usr/local/bin/vdb-dump diff --git a/quay.io/biocontainers/zipstrain/container.yaml b/quay.io/biocontainers/zipstrain/container.yaml new file mode 100644 index 0000000000000..37242c1639fa1 --- /dev/null +++ b/quay.io/biocontainers/zipstrain/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/zipstrain +maintainer: '@vsoch' +description: singularity registry hpc automated addition for zipstrain +latest: + 0.1.7--pyhdfd78af_0: + sha256:62d0291f0b911ed895e5b4794b8a10c582565ee40e69e41e1a7509702675d1e8 +tags: + 0.1.7--pyhdfd78af_0: + sha256:62d0291f0b911ed895e5b4794b8a10c582565ee40e69e41e1a7509702675d1e8 +docker: quay.io/biocontainers/zipstrain +aliases: + zipstrain: /usr/local/bin/zipstrain + plotly_get_chrome: /usr/local/bin/plotly_get_chrome + h2benchmark: /usr/local/bin/h2benchmark + protoc-31.1.0: /usr/local/bin/protoc-31.1.0 + protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0 + protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0 + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + protoc-gen-upb: /usr/local/bin/protoc-gen-upb + protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs + checksum-profile: /usr/local/bin/checksum-profile + elastishadow: /usr/local/bin/elastishadow + ref-cache: /usr/local/bin/ref-cache + elastipubsub5: /usr/local/bin/elastipubsub5 + mqtt5_app: /usr/local/bin/mqtt5_app + mqtt5_canary: /usr/local/bin/mqtt5_canary + mqtt5canary: /usr/local/bin/mqtt5canary + elasticurl: /usr/local/bin/elasticurl + elasticurl_cpp: /usr/local/bin/elasticurl_cpp + elastipubsub: /usr/local/bin/elastipubsub + csv-import: /usr/local/bin/csv-import + orc-memory: /usr/local/bin/orc-memory + orc-scan: /usr/local/bin/orc-scan + timezone-dump: /usr/local/bin/timezone-dump