From d7415dc7dc5b6b33de3c1c7e4d844dc90374ac1e Mon Sep 17 00:00:00 2001 From: github-actions Date: Mon, 15 Dec 2025 03:52:59 +0000 Subject: [PATCH] Automated deployment to update containers 2025-12-15 --- quay.io/biocontainers/minkemap/container.yaml | 34 +++++++++++ quay.io/biocontainers/pyonsite/container.yaml | 60 +++++++++++++++++++ quay.io/biocontainers/r-rldne/container.yaml | 19 ++++++ quay.io/biocontainers/sapling/container.yaml | 20 +++++++ .../biocontainers/spestimator/container.yaml | 37 ++++++++++++ 5 files changed, 170 insertions(+) create mode 100644 quay.io/biocontainers/minkemap/container.yaml create mode 100644 quay.io/biocontainers/pyonsite/container.yaml create mode 100644 quay.io/biocontainers/r-rldne/container.yaml create mode 100644 quay.io/biocontainers/sapling/container.yaml create mode 100644 quay.io/biocontainers/spestimator/container.yaml diff --git a/quay.io/biocontainers/minkemap/container.yaml b/quay.io/biocontainers/minkemap/container.yaml new file mode 100644 index 0000000000000..8eabf9ab3cc7d --- /dev/null +++ b/quay.io/biocontainers/minkemap/container.yaml @@ -0,0 +1,34 @@ +url: https://biocontainers.pro/tools/minkemap +maintainer: '@vsoch' +description: singularity registry hpc automated addition for minkemap +latest: + 0.1.0--pyhdfd78af_0: + sha256:0995952eb06867f0c733ad29655e180452148982be1a12a967c143943c34a483 +tags: + 0.1.0--pyhdfd78af_0: + sha256:0995952eb06867f0c733ad29655e180452148982be1a12a967c143943c34a483 +docker: quay.io/biocontainers/minkemap +aliases: + minkemap: /usr/local/bin/minkemap + minimap2.py: /usr/local/bin/minimap2.py + qconvex: /usr/local/bin/qconvex + qdelaunay: /usr/local/bin/qdelaunay + qhalf: /usr/local/bin/qhalf + qhull: /usr/local/bin/qhull + qvoronoi: /usr/local/bin/qvoronoi + rbox: /usr/local/bin/rbox + numpy-config: /usr/local/bin/numpy-config + 2to3-3.12: /usr/local/bin/2to3-3.12 + idle3.12: /usr/local/bin/idle3.12 + pydoc3.12: /usr/local/bin/pydoc3.12 + python3.12: /usr/local/bin/python3.12 + python3.12-config: /usr/local/bin/python3.12-config + fonttools: /usr/local/bin/fonttools + pyftmerge: /usr/local/bin/pyftmerge + pyftsubset: /usr/local/bin/pyftsubset + ttx: /usr/local/bin/ttx + brotli: /usr/local/bin/brotli + tjbench: /usr/local/bin/tjbench + opj_compress: /usr/local/bin/opj_compress + opj_decompress: /usr/local/bin/opj_decompress + opj_dump: /usr/local/bin/opj_dump diff --git a/quay.io/biocontainers/pyonsite/container.yaml b/quay.io/biocontainers/pyonsite/container.yaml new file mode 100644 index 0000000000000..9e843cbcf77a3 --- /dev/null +++ b/quay.io/biocontainers/pyonsite/container.yaml @@ -0,0 +1,60 @@ +url: https://biocontainers.pro/tools/pyonsite +maintainer: '@vsoch' +description: singularity registry hpc automated addition for pyonsite +latest: + 0.0.1--pyhdfd78af_0: + sha256:9b1b9e196eccd6aae8ffe3005b951f5471d464dd925a3a94c05b3b1de0eee810 +tags: + 0.0.1--pyhdfd78af_0: + sha256:9b1b9e196eccd6aae8ffe3005b951f5471d464dd925a3a94c05b3b1de0eee810 +docker: quay.io/biocontainers/pyonsite +aliases: + androiddeployqt6: /usr/local/bin/androiddeployqt6 + ascore: /usr/local/bin/ascore + assistant6: /usr/local/bin/assistant6 + designer6: /usr/local/bin/designer6 + linguist6: /usr/local/bin/linguist6 + lucxor: /usr/local/bin/lucxor + onsite: /usr/local/bin/onsite + phospho-scoring: /usr/local/bin/phospho-scoring + phosphors: /usr/local/bin/phosphors + phosphors-scoring: /usr/local/bin/phosphors-scoring + pixeltool6: /usr/local/bin/pixeltool6 + qdbus6: /usr/local/bin/qdbus6 + qdbusviewer6: /usr/local/bin/qdbusviewer6 + qdistancefieldgenerator6: /usr/local/bin/qdistancefieldgenerator6 + qdoc6: /usr/local/bin/qdoc6 + qmake6: /usr/local/bin/qmake6 + qml6: /usr/local/bin/qml6 + qmleasing6: /usr/local/bin/qmleasing6 + qmlls6: /usr/local/bin/qmlls6 + qmlpreview6: /usr/local/bin/qmlpreview6 + qmlscene6: /usr/local/bin/qmlscene6 + qt6.conf: /usr/local/bin/qt6.conf + qtdiag6: /usr/local/bin/qtdiag6 + qtplugininfo6: /usr/local/bin/qtplugininfo6 + svm-predict: /usr/local/bin/svm-predict + svm-scale: /usr/local/bin/svm-scale + svm-train: /usr/local/bin/svm-train + ldapadd: /usr/local/bin/ldapadd + ldapcompare: /usr/local/bin/ldapcompare + ldapdelete: /usr/local/bin/ldapdelete + ldapexop: /usr/local/bin/ldapexop + ldapmodify: /usr/local/bin/ldapmodify + ldapmodrdn: /usr/local/bin/ldapmodrdn + ldappasswd: /usr/local/bin/ldappasswd + ldapsearch: /usr/local/bin/ldapsearch + ldapurl: /usr/local/bin/ldapurl + ldapvc: /usr/local/bin/ldapvc + ldapwhoami: /usr/local/bin/ldapwhoami + wayland-scanner: /usr/local/bin/wayland-scanner + CreateDOMDocument: /usr/local/bin/CreateDOMDocument + DOMCount: /usr/local/bin/DOMCount + DOMPrint: /usr/local/bin/DOMPrint + EnumVal: /usr/local/bin/EnumVal + MemParse: /usr/local/bin/MemParse + PParse: /usr/local/bin/PParse + PSVIWriter: /usr/local/bin/PSVIWriter + Redirect: /usr/local/bin/Redirect + SAX2Count: /usr/local/bin/SAX2Count + SAX2Print: /usr/local/bin/SAX2Print diff --git a/quay.io/biocontainers/r-rldne/container.yaml b/quay.io/biocontainers/r-rldne/container.yaml new file mode 100644 index 0000000000000..c08eb6032374a --- /dev/null +++ b/quay.io/biocontainers/r-rldne/container.yaml @@ -0,0 +1,19 @@ +url: https://biocontainers.pro/tools/r-rldne +maintainer: '@vsoch' +description: singularity registry hpc automated addition for r-rldne +latest: + 1.0.0--r45hdfd78af_0: + sha256:31d3aeb318036a1ee4048430fa414fafdaa25e9940643304e079c6d83bdb1076 +tags: + 1.0.0--r45hdfd78af_0: + sha256:31d3aeb318036a1ee4048430fa414fafdaa25e9940643304e079c6d83bdb1076 +docker: quay.io/biocontainers/r-rldne +aliases: + Ne2-1L: /usr/local/bin/Ne2-1L + git2: /usr/local/bin/git2 + pandoc-lua: /usr/local/bin/pandoc-lua + pandoc-server: /usr/local/bin/pandoc-server + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc: /usr/local/bin/pandoc + hb-info: /usr/local/bin/hb-info + tjbench: /usr/local/bin/tjbench diff --git a/quay.io/biocontainers/sapling/container.yaml b/quay.io/biocontainers/sapling/container.yaml new file mode 100644 index 0000000000000..a19be7fe83f1a --- /dev/null +++ b/quay.io/biocontainers/sapling/container.yaml @@ -0,0 +1,20 @@ +url: https://biocontainers.pro/tools/sapling +maintainer: '@vsoch' +description: singularity registry hpc automated addition for sapling +latest: + 1.0.0--pyhdfd78af_0: + sha256:4330ff5d810f5d9f034d3e30802bbf0b4869095e3870f535fe23a60e42ff398a +tags: + 1.0.0--pyhdfd78af_0: + sha256:4330ff5d810f5d9f034d3e30802bbf0b4869095e3870f535fe23a60e42ff398a +docker: quay.io/biocontainers/sapling +aliases: + fastppm-cli: /usr/local/bin/fastppm-cli + sapling: /usr/local/bin/sapling + numpy-config: /usr/local/bin/numpy-config + 2to3-3.12: /usr/local/bin/2to3-3.12 + idle3.12: /usr/local/bin/idle3.12 + pydoc3.12: /usr/local/bin/pydoc3.12 + python3.12: /usr/local/bin/python3.12 + python3.12-config: /usr/local/bin/python3.12-config + tqdm: /usr/local/bin/tqdm diff --git a/quay.io/biocontainers/spestimator/container.yaml b/quay.io/biocontainers/spestimator/container.yaml new file mode 100644 index 0000000000000..ad5357eb6d690 --- /dev/null +++ b/quay.io/biocontainers/spestimator/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/spestimator +maintainer: '@vsoch' +description: singularity registry hpc automated addition for spestimator +latest: + 0.1.0.232--pyhdfd78af_0: + sha256:26ff0b944cd8d3c5fb59fafa1ead3458bae50fdb8d216a0896776b1f9cdc4a4c +tags: + 0.1.0.232--pyhdfd78af_0: + sha256:26ff0b944cd8d3c5fb59fafa1ead3458bae50fdb8d216a0896776b1f9cdc4a4c +docker: quay.io/biocontainers/spestimator +aliases: + spestimator: /usr/local/bin/spestimator + archive-nlmnlp: /usr/local/bin/archive-nlmnlp + archive-pids: /usr/local/bin/archive-pids + download-flatfile: /usr/local/bin/download-flatfile + ecollect: /usr/local/bin/ecollect + gbf2facds: /usr/local/bin/gbf2facds + gbf2tbl: /usr/local/bin/gbf2tbl + gff-sort: /usr/local/bin/gff-sort + gff2xml: /usr/local/bin/gff2xml + pair-at-a-time: /usr/local/bin/pair-at-a-time + print-missing-subranges: /usr/local/bin/print-missing-subranges + sort-by-length: /usr/local/bin/sort-by-length + xcommon.sh: /usr/local/bin/xcommon.sh + xfetch: /usr/local/bin/xfetch + xfetch.ini: /usr/local/bin/xfetch.ini + xfilter: /usr/local/bin/xfilter + xinfo: /usr/local/bin/xinfo + xlink: /usr/local/bin/xlink + xlink.ini: /usr/local/bin/xlink.ini + xsearch: /usr/local/bin/xsearch + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + bsmp2info: /usr/local/bin/bsmp2info + fsa2xml: /usr/local/bin/fsa2xml