diff --git a/quay.io/biocontainers/babappalign/container.yaml b/quay.io/biocontainers/babappalign/container.yaml new file mode 100644 index 0000000000000..b06daa89324f5 --- /dev/null +++ b/quay.io/biocontainers/babappalign/container.yaml @@ -0,0 +1,32 @@ +url: https://biocontainers.pro/tools/babappalign +maintainer: '@vsoch' +description: singularity registry hpc automated addition for babappalign +latest: + 1.0.0--pyhdfd78af_0: + sha256:11b7926ed77fa26729af5b3886160f35f8087bc740e0cc3caa2a924b747b7a9e +tags: + 1.0.0--pyhdfd78af_0: + sha256:11b7926ed77fa26729af5b3886160f35f8087bc740e0cc3caa2a924b747b7a9e +docker: quay.io/biocontainers/babappalign +aliases: + babappalign: /usr/local/bin/babappalign + babappascore: /usr/local/bin/babappascore + xxh3sum: /usr/local/bin/xxh3sum + protoc-28.3.0: /usr/local/bin/protoc-28.3.0 + torchfrtrace: /usr/local/bin/torchfrtrace + pybind11-config: /usr/local/bin/pybind11-config + torch_shm_manager: /usr/local/bin/torch_shm_manager + xxh128sum: /usr/local/bin/xxh128sum + xxh32sum: /usr/local/bin/xxh32sum + xxh64sum: /usr/local/bin/xxh64sum + xxhsum: /usr/local/bin/xxhsum + isympy: /usr/local/bin/isympy + torchrun: /usr/local/bin/torchrun + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config + protoc: /usr/local/bin/protoc + tqdm: /usr/local/bin/tqdm + normalizer: /usr/local/bin/normalizer diff --git a/quay.io/biocontainers/bigmag/container.yaml b/quay.io/biocontainers/bigmag/container.yaml new file mode 100644 index 0000000000000..87f3d16e35095 --- /dev/null +++ b/quay.io/biocontainers/bigmag/container.yaml @@ -0,0 +1,42 @@ +url: https://biocontainers.pro/tools/bigmag +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bigmag +latest: + 1.1.0--pyhdfd78af_0: + sha256:f0db388304b1fcc8d87ac7c94145c0efd689df79bdd182e13122be388cb7b3d7 +tags: + 1.1.0--pyhdfd78af_0: + sha256:f0db388304b1fcc8d87ac7c94145c0efd689df79bdd182e13122be388cb7b3d7 +docker: quay.io/biocontainers/bigmag +aliases: + bigmag: /usr/local/bin/bigmag + bigmag-lite: /usr/local/bin/bigmag-lite + dash-update-components: /usr/local/bin/dash-update-components + geo2fastq: /usr/local/bin/geo2fastq + gunicorn: /usr/local/bin/gunicorn + plotly: /usr/local/bin/plotly + parmed: /usr/local/bin/parmed + renderer: /usr/local/bin/renderer + dash-generate-components: /usr/local/bin/dash-generate-components + plotly_get_chrome: /usr/local/bin/plotly_get_chrome + flask: /usr/local/bin/flask + tabulate: /usr/local/bin/tabulate + qconvex: /usr/local/bin/qconvex + qdelaunay: /usr/local/bin/qdelaunay + qhalf: /usr/local/bin/qhalf + qhull: /usr/local/bin/qhull + qvoronoi: /usr/local/bin/qvoronoi + rbox: /usr/local/bin/rbox + jsonschema: /usr/local/bin/jsonschema + 2to3-3.11: /usr/local/bin/2to3-3.11 + idle3.11: /usr/local/bin/idle3.11 + pydoc3.11: /usr/local/bin/pydoc3.11 + python3.11: /usr/local/bin/python3.11 + python3.11-config: /usr/local/bin/python3.11-config + tqdm: /usr/local/bin/tqdm + fonttools: /usr/local/bin/fonttools + pyftmerge: /usr/local/bin/pyftmerge + pyftsubset: /usr/local/bin/pyftsubset + ttx: /usr/local/bin/ttx + brotli: /usr/local/bin/brotli + normalizer: /usr/local/bin/normalizer diff --git a/quay.io/biocontainers/enzymm/container.yaml b/quay.io/biocontainers/enzymm/container.yaml new file mode 100644 index 0000000000000..df6e6abec58e4 --- /dev/null +++ b/quay.io/biocontainers/enzymm/container.yaml @@ -0,0 +1,20 @@ +url: https://biocontainers.pro/tools/enzymm +maintainer: '@vsoch' +description: singularity registry hpc automated addition for enzymm +latest: + 0.3.1--pyhdfd78af_0: + sha256:756058e43825668c68b3f3146ecda8ada522ddacea3310413de94cec2fa43f73 +tags: + 0.3.1--pyhdfd78af_0: + sha256:756058e43825668c68b3f3146ecda8ada522ddacea3310413de94cec2fa43f73 +docker: quay.io/biocontainers/enzymm +aliases: + enzymm: /usr/local/bin/enzymm + pyjess: /usr/local/bin/pyjess + markdown-it: /usr/local/bin/markdown-it + pygmentize: /usr/local/bin/pygmentize + 2to3-3.9: /usr/local/bin/2to3-3.9 + idle3.9: /usr/local/bin/idle3.9 + pydoc3.9: /usr/local/bin/pydoc3.9 + python3.9: /usr/local/bin/python3.9 + python3.9-config: /usr/local/bin/python3.9-config diff --git a/quay.io/biocontainers/fetchmgs/container.yaml b/quay.io/biocontainers/fetchmgs/container.yaml new file mode 100644 index 0000000000000..ba9aaf674214e --- /dev/null +++ b/quay.io/biocontainers/fetchmgs/container.yaml @@ -0,0 +1,20 @@ +url: https://biocontainers.pro/tools/fetchmgs +maintainer: '@vsoch' +description: singularity registry hpc automated addition for fetchmgs +latest: + 2.1.2--pyh7e72e81_0: + sha256:8716c2a03b951f6d17f73f8a233c008aaf4a9ead388e65f3942f12157878d344 +tags: + 2.1.2--pyh7e72e81_0: + sha256:8716c2a03b951f6d17f73f8a233c008aaf4a9ead388e65f3942f12157878d344 +docker: quay.io/biocontainers/fetchmgs +aliases: + fetchMGs: /usr/local/bin/fetchMGs + archspec: /usr/local/bin/archspec + pyrodigal: /usr/local/bin/pyrodigal + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config + tqdm: /usr/local/bin/tqdm diff --git a/quay.io/biocontainers/isonclust3/container.yaml b/quay.io/biocontainers/isonclust3/container.yaml new file mode 100644 index 0000000000000..5b09d6a98a356 --- /dev/null +++ b/quay.io/biocontainers/isonclust3/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/isonclust3 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for isonclust3 +latest: + 0.3.0--h4349ce8_0: + sha256:e930b850b289f5b69a4131aa1d0da4424aeed459897ac9780871542365bd1f3b +tags: + 0.3.0--h4349ce8_0: + sha256:e930b850b289f5b69a4131aa1d0da4424aeed459897ac9780871542365bd1f3b +docker: quay.io/biocontainers/isonclust3 +aliases: + isONclust3: /usr/local/bin/isONclust3 diff --git a/quay.io/biocontainers/kmindex/container.yaml b/quay.io/biocontainers/kmindex/container.yaml new file mode 100644 index 0000000000000..72852f13c089e --- /dev/null +++ b/quay.io/biocontainers/kmindex/container.yaml @@ -0,0 +1,14 @@ +url: https://biocontainers.pro/tools/kmindex +maintainer: '@vsoch' +description: singularity registry hpc automated addition for kmindex +latest: + 0.6.0--h668145b_1: + sha256:af736c828c2da24cde3706ff65930162a1a62677bf25652c07f022e7f63b205a +tags: + 0.6.0--h668145b_1: + sha256:af736c828c2da24cde3706ff65930162a1a62677bf25652c07f022e7f63b205a +docker: quay.io/biocontainers/kmindex +aliases: + kmindex: /usr/local/bin/kmindex + kmindex-server: /usr/local/bin/kmindex-server + kmtricks: /usr/local/bin/kmtricks diff --git a/quay.io/biocontainers/lirtmats/container.yaml b/quay.io/biocontainers/lirtmats/container.yaml new file mode 100644 index 0000000000000..52f7049f0fc0a --- /dev/null +++ b/quay.io/biocontainers/lirtmats/container.yaml @@ -0,0 +1,67 @@ +url: https://biocontainers.pro/tools/lirtmats +maintainer: '@vsoch' +description: singularity registry hpc automated addition for lirtmats +latest: + 1.0.0--pyhdfd78af_0: + sha256:a4b02c3e698afeca87bd84ce0cdaf2f553b7462b0de8bde42dad769ccdd0ee67 +tags: + 1.0.0--pyhdfd78af_0: + sha256:a4b02c3e698afeca87bd84ce0cdaf2f553b7462b0de8bde42dad769ccdd0ee67 +docker: quay.io/biocontainers/lirtmats +aliases: + android_deploy.py: /usr/local/bin/android_deploy.py + androiddeployqt6: /usr/local/bin/androiddeployqt6 + assistant6: /usr/local/bin/assistant6 + deploy.py: /usr/local/bin/deploy.py + designer6: /usr/local/bin/designer6 + lamp: /usr/local/bin/lamp + linguist6: /usr/local/bin/linguist6 + lirtmats: /usr/local/bin/lirtmats + metaobjectdump.py: /usr/local/bin/metaobjectdump.py + pixeltool6: /usr/local/bin/pixeltool6 + project.py: /usr/local/bin/project.py + pyside6-rcc: /usr/local/bin/pyside6-rcc + pyside6-uic: /usr/local/bin/pyside6-uic + qdbus6: /usr/local/bin/qdbus6 + qdbusviewer6: /usr/local/bin/qdbusviewer6 + qdistancefieldgenerator6: /usr/local/bin/qdistancefieldgenerator6 + qdoc6: /usr/local/bin/qdoc6 + qmake6: /usr/local/bin/qmake6 + qml.py: /usr/local/bin/qml.py + qml6: /usr/local/bin/qml6 + qmleasing6: /usr/local/bin/qmleasing6 + qmlls6: /usr/local/bin/qmlls6 + qmlpreview6: /usr/local/bin/qmlpreview6 + qmlscene6: /usr/local/bin/qmlscene6 + qt6.conf: /usr/local/bin/qt6.conf + qtdiag6: /usr/local/bin/qtdiag6 + qtplugininfo6: /usr/local/bin/qtplugininfo6 + qtpy2cpp.py: /usr/local/bin/qtpy2cpp.py + requirements-android.txt: /usr/local/bin/requirements-android.txt + shiboken6: /usr/local/bin/shiboken6 + shiboken_tool.py: /usr/local/bin/shiboken_tool.py + ldapadd: /usr/local/bin/ldapadd + ldapcompare: /usr/local/bin/ldapcompare + ldapdelete: /usr/local/bin/ldapdelete + ldapexop: /usr/local/bin/ldapexop + ldapmodify: /usr/local/bin/ldapmodify + ldapmodrdn: /usr/local/bin/ldapmodrdn + ldappasswd: /usr/local/bin/ldappasswd + ldapsearch: /usr/local/bin/ldapsearch + ldapurl: /usr/local/bin/ldapurl + ldapvc: /usr/local/bin/ldapvc + ldapwhoami: /usr/local/bin/ldapwhoami + runxlrd.py: /usr/local/bin/runxlrd.py + wayland-scanner: /usr/local/bin/wayland-scanner + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + xkbcli: /usr/local/bin/xkbcli + pg_config: /usr/local/bin/pg_config + natsort: /usr/local/bin/natsort + cups-config: /usr/local/bin/cups-config + ippeveprinter: /usr/local/bin/ippeveprinter + ipptool: /usr/local/bin/ipptool + xslt-config: /usr/local/bin/xslt-config + xsltproc: /usr/local/bin/xsltproc diff --git a/quay.io/biocontainers/montreal-forced-aligner/container.yaml b/quay.io/biocontainers/montreal-forced-aligner/container.yaml new file mode 100644 index 0000000000000..f21832b5a253c --- /dev/null +++ b/quay.io/biocontainers/montreal-forced-aligner/container.yaml @@ -0,0 +1,645 @@ +url: https://biocontainers.pro/tools/montreal-forced-aligner +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + montreal-forced-aligner +latest: + 3.3.8: sha256:c62bff6e48d9052e68b2b5e7ba70cd7a27d88fbd15d83e835472043342ac7bdb +tags: + 3.3.8: sha256:c62bff6e48d9052e68b2b5e7ba70cd7a27d88fbd15d83e835472043342ac7bdb +docker: quay.io/biocontainers/montreal-forced-aligner +aliases: + acc-lda: /usr/local/bin/acc-lda + acc-tree-stats: /usr/local/bin/acc-tree-stats + add-deltas: /usr/local/bin/add-deltas + add-deltas-sdc: /usr/local/bin/add-deltas-sdc + add-self-loops: /usr/local/bin/add-self-loops + agglomerative-cluster: /usr/local/bin/agglomerative-cluster + ali-to-pdf: /usr/local/bin/ali-to-pdf + ali-to-phones: /usr/local/bin/ali-to-phones + ali-to-post: /usr/local/bin/ali-to-post + align-compiled-mapped: /usr/local/bin/align-compiled-mapped + align-equal: /usr/local/bin/align-equal + align-equal-compiled: /usr/local/bin/align-equal-compiled + align-mapped: /usr/local/bin/align-mapped + align-text: /usr/local/bin/align-text + am-info: /usr/local/bin/am-info + analyze-counts: /usr/local/bin/analyze-counts + append-post-to-feats: /usr/local/bin/append-post-to-feats + append-vector-to-feats: /usr/local/bin/append-vector-to-feats + apply-cmvn: /usr/local/bin/apply-cmvn + apply-cmvn-online: /usr/local/bin/apply-cmvn-online + apply-cmvn-sliding: /usr/local/bin/apply-cmvn-sliding + arpa-to-const-arpa: /usr/local/bin/arpa-to-const-arpa + arpa2fst: /usr/local/bin/arpa2fst + baumwelchdecode: /usr/local/bin/baumwelchdecode + baumwelchrandomize: /usr/local/bin/baumwelchrandomize + baumwelchtrain: /usr/local/bin/baumwelchtrain + build-pfile-from-ali: /usr/local/bin/build-pfile-from-ali + build-tree: /usr/local/bin/build-tree + build-tree-two-level: /usr/local/bin/build-tree-two-level + chain-est-phone-lm: /usr/local/bin/chain-est-phone-lm + chain-get-supervision: /usr/local/bin/chain-get-supervision + chain-make-den-fst: /usr/local/bin/chain-make-den-fst + chain-make-num-fst-e2e: /usr/local/bin/chain-make-num-fst-e2e + cluster-phones: /usr/local/bin/cluster-phones + cmvn-to-nnet: /usr/local/bin/cmvn-to-nnet + compare-feats: /usr/local/bin/compare-feats + compare-int-vector: /usr/local/bin/compare-int-vector + compile-graph: /usr/local/bin/compile-graph + compile-questions: /usr/local/bin/compile-questions + compile-train-graphs: /usr/local/bin/compile-train-graphs + compile-train-graphs-fsts: /usr/local/bin/compile-train-graphs-fsts + compile-train-graphs-without-lexicon: + /usr/local/bin/compile-train-graphs-without-lexicon + compose-transforms: /usr/local/bin/compose-transforms + compress-uncompress-speex: /usr/local/bin/compress-uncompress-speex + compute-and-process-kaldi-pitch-feats: + /usr/local/bin/compute-and-process-kaldi-pitch-feats + compute-atwv: /usr/local/bin/compute-atwv + compute-cmvn-stats: /usr/local/bin/compute-cmvn-stats + compute-cmvn-stats-two-channel: /usr/local/bin/compute-cmvn-stats-two-channel + compute-eer: /usr/local/bin/compute-eer + compute-fbank-feats: /usr/local/bin/compute-fbank-feats + compute-gop: /usr/local/bin/compute-gop + compute-kaldi-pitch-feats: /usr/local/bin/compute-kaldi-pitch-feats + compute-mfcc-feats: /usr/local/bin/compute-mfcc-feats + compute-plp-feats: /usr/local/bin/compute-plp-feats + compute-spectrogram-feats: /usr/local/bin/compute-spectrogram-feats + compute-vad: /usr/local/bin/compute-vad + compute-vad-from-frame-likes: /usr/local/bin/compute-vad-from-frame-likes + compute-wer: /usr/local/bin/compute-wer + compute-wer-bootci: /usr/local/bin/compute-wer-bootci + concat-feats: /usr/local/bin/concat-feats + convert-ali: /usr/local/bin/convert-ali + copy-feats: /usr/local/bin/copy-feats + copy-feats-to-htk: /usr/local/bin/copy-feats-to-htk + copy-feats-to-sphinx: /usr/local/bin/copy-feats-to-sphinx + copy-gselect: /usr/local/bin/copy-gselect + copy-int-vector: /usr/local/bin/copy-int-vector + copy-matrix: /usr/local/bin/copy-matrix + copy-post: /usr/local/bin/copy-post + copy-transition-model: /usr/local/bin/copy-transition-model + copy-tree: /usr/local/bin/copy-tree + copy-vector: /usr/local/bin/copy-vector + cuda-compiled: /usr/local/bin/cuda-compiled + cuda-gpu-available: /usr/local/bin/cuda-gpu-available + decode-faster: /usr/local/bin/decode-faster + decode-faster-mapped: /usr/local/bin/decode-faster-mapped + dot_sandbox: /usr/local/bin/dot_sandbox + draw-tree: /usr/local/bin/draw-tree + est-lda: /usr/local/bin/est-lda + est-mllt: /usr/local/bin/est-mllt + est-pca: /usr/local/bin/est-pca + extend-transform-dim: /usr/local/bin/extend-transform-dim + extend-wav-with-silence: /usr/local/bin/extend-wav-with-silence + extract-feature-segments: /usr/local/bin/extract-feature-segments + extract-segments: /usr/local/bin/extract-segments + farcompilestrings: /usr/local/bin/farcompilestrings + farconvert: /usr/local/bin/farconvert + farcreate: /usr/local/bin/farcreate + farencode: /usr/local/bin/farencode + farequal: /usr/local/bin/farequal + farextract: /usr/local/bin/farextract + farinfo: /usr/local/bin/farinfo + farisomorphic: /usr/local/bin/farisomorphic + farprintstrings: /usr/local/bin/farprintstrings + feat-to-dim: /usr/local/bin/feat-to-dim + feat-to-len: /usr/local/bin/feat-to-len + feat-to-post: /usr/local/bin/feat-to-post + ffplay: /usr/local/bin/ffplay + fmpe-acc-stats: /usr/local/bin/fmpe-acc-stats + fmpe-apply-transform: /usr/local/bin/fmpe-apply-transform + fmpe-est: /usr/local/bin/fmpe-est + fmpe-init: /usr/local/bin/fmpe-init + fmpe-sum-accs: /usr/local/bin/fmpe-sum-accs + fstaddselfloops: /usr/local/bin/fstaddselfloops + fstaddsubsequentialloop: /usr/local/bin/fstaddsubsequentialloop + fstarcsort: /usr/local/bin/fstarcsort + fstclosure: /usr/local/bin/fstclosure + fstcompile: /usr/local/bin/fstcompile + fstcompose: /usr/local/bin/fstcompose + fstcomposecontext: /usr/local/bin/fstcomposecontext + fstcompress: /usr/local/bin/fstcompress + fstconcat: /usr/local/bin/fstconcat + fstconnect: /usr/local/bin/fstconnect + fstconvert: /usr/local/bin/fstconvert + fstcopy: /usr/local/bin/fstcopy + fstdeterminize: /usr/local/bin/fstdeterminize + fstdeterminizelog: /usr/local/bin/fstdeterminizelog + fstdeterminizestar: /usr/local/bin/fstdeterminizestar + fstdifference: /usr/local/bin/fstdifference + fstdisambiguate: /usr/local/bin/fstdisambiguate + fstdraw: /usr/local/bin/fstdraw + fstencode: /usr/local/bin/fstencode + fstepsnormalize: /usr/local/bin/fstepsnormalize + fstequal: /usr/local/bin/fstequal + fstequivalent: /usr/local/bin/fstequivalent + fstinfo: /usr/local/bin/fstinfo + fstintersect: /usr/local/bin/fstintersect + fstinvert: /usr/local/bin/fstinvert + fstisomorphic: /usr/local/bin/fstisomorphic + fstisstochastic: /usr/local/bin/fstisstochastic + fstlinear: /usr/local/bin/fstlinear + fstloglinearapply: /usr/local/bin/fstloglinearapply + fstmakecontextfst: /usr/local/bin/fstmakecontextfst + fstmakecontextsyms: /usr/local/bin/fstmakecontextsyms + fstmap: /usr/local/bin/fstmap + fstminimize: /usr/local/bin/fstminimize + fstminimizeencoded: /usr/local/bin/fstminimizeencoded + fstphicompose: /usr/local/bin/fstphicompose + fstprint: /usr/local/bin/fstprint + fstproject: /usr/local/bin/fstproject + fstprune: /usr/local/bin/fstprune + fstpush: /usr/local/bin/fstpush + fstpushspecial: /usr/local/bin/fstpushspecial + fstrand: /usr/local/bin/fstrand + fstrandgen: /usr/local/bin/fstrandgen + fstrelabel: /usr/local/bin/fstrelabel + fstreplace: /usr/local/bin/fstreplace + fstreverse: /usr/local/bin/fstreverse + fstreweight: /usr/local/bin/fstreweight + fstrmepsilon: /usr/local/bin/fstrmepsilon + fstrmepslocal: /usr/local/bin/fstrmepslocal + fstrmsymbols: /usr/local/bin/fstrmsymbols + fsts-concat: /usr/local/bin/fsts-concat + fsts-project: /usr/local/bin/fsts-project + fsts-to-transcripts: /usr/local/bin/fsts-to-transcripts + fsts-union: /usr/local/bin/fsts-union + fstshortestdistance: /usr/local/bin/fstshortestdistance + fstshortestpath: /usr/local/bin/fstshortestpath + fstspecial: /usr/local/bin/fstspecial + fstsymbols: /usr/local/bin/fstsymbols + fstsynchronize: /usr/local/bin/fstsynchronize + fsttablecompose: /usr/local/bin/fsttablecompose + fsttopsort: /usr/local/bin/fsttopsort + fstunion: /usr/local/bin/fstunion + generate-proxy-keywords: /usr/local/bin/generate-proxy-keywords + get-full-lda-mat: /usr/local/bin/get-full-lda-mat + get-post-on-ali: /usr/local/bin/get-post-on-ali + glslang: /usr/local/bin/glslang + glslangValidator: /usr/local/bin/glslangValidator + glslc: /usr/local/bin/glslc + gmm-acc-mllt: /usr/local/bin/gmm-acc-mllt + gmm-acc-mllt-global: /usr/local/bin/gmm-acc-mllt-global + gmm-acc-stats: /usr/local/bin/gmm-acc-stats + gmm-acc-stats-ali: /usr/local/bin/gmm-acc-stats-ali + gmm-acc-stats-twofeats: /usr/local/bin/gmm-acc-stats-twofeats + gmm-acc-stats2: /usr/local/bin/gmm-acc-stats2 + gmm-adapt-map: /usr/local/bin/gmm-adapt-map + gmm-align: /usr/local/bin/gmm-align + gmm-align-compiled: /usr/local/bin/gmm-align-compiled + gmm-basis-fmllr-accs: /usr/local/bin/gmm-basis-fmllr-accs + gmm-basis-fmllr-accs-gpost: /usr/local/bin/gmm-basis-fmllr-accs-gpost + gmm-basis-fmllr-training: /usr/local/bin/gmm-basis-fmllr-training + gmm-boost-silence: /usr/local/bin/gmm-boost-silence + gmm-compute-likes: /usr/local/bin/gmm-compute-likes + gmm-copy: /usr/local/bin/gmm-copy + gmm-decode-biglm-faster: /usr/local/bin/gmm-decode-biglm-faster + gmm-decode-faster: /usr/local/bin/gmm-decode-faster + gmm-decode-faster-regtree-fmllr: + /usr/local/bin/gmm-decode-faster-regtree-fmllr + gmm-decode-faster-regtree-mllr: /usr/local/bin/gmm-decode-faster-regtree-mllr + gmm-decode-simple: /usr/local/bin/gmm-decode-simple + gmm-est: /usr/local/bin/gmm-est + gmm-est-basis-fmllr: /usr/local/bin/gmm-est-basis-fmllr + gmm-est-basis-fmllr-gpost: /usr/local/bin/gmm-est-basis-fmllr-gpost + gmm-est-fmllr: /usr/local/bin/gmm-est-fmllr + gmm-est-fmllr-global: /usr/local/bin/gmm-est-fmllr-global + gmm-est-fmllr-gpost: /usr/local/bin/gmm-est-fmllr-gpost + gmm-est-fmllr-raw: /usr/local/bin/gmm-est-fmllr-raw + gmm-est-fmllr-raw-gpost: /usr/local/bin/gmm-est-fmllr-raw-gpost + gmm-est-gaussians-ebw: /usr/local/bin/gmm-est-gaussians-ebw + gmm-est-lvtln-trans: /usr/local/bin/gmm-est-lvtln-trans + gmm-est-map: /usr/local/bin/gmm-est-map + gmm-est-regtree-fmllr: /usr/local/bin/gmm-est-regtree-fmllr + gmm-est-regtree-fmllr-ali: /usr/local/bin/gmm-est-regtree-fmllr-ali + gmm-est-regtree-mllr: /usr/local/bin/gmm-est-regtree-mllr + gmm-est-rescale: /usr/local/bin/gmm-est-rescale + gmm-est-weights-ebw: /usr/local/bin/gmm-est-weights-ebw + gmm-fmpe-acc-stats: /usr/local/bin/gmm-fmpe-acc-stats + gmm-get-stats-deriv: /usr/local/bin/gmm-get-stats-deriv + gmm-global-acc-stats: /usr/local/bin/gmm-global-acc-stats + gmm-global-acc-stats-twofeats: /usr/local/bin/gmm-global-acc-stats-twofeats + gmm-global-copy: /usr/local/bin/gmm-global-copy + gmm-global-est: /usr/local/bin/gmm-global-est + gmm-global-est-fmllr: /usr/local/bin/gmm-global-est-fmllr + gmm-global-est-lvtln-trans: /usr/local/bin/gmm-global-est-lvtln-trans + gmm-global-get-frame-likes: /usr/local/bin/gmm-global-get-frame-likes + gmm-global-get-post: /usr/local/bin/gmm-global-get-post + gmm-global-gselect-to-post: /usr/local/bin/gmm-global-gselect-to-post + gmm-global-info: /usr/local/bin/gmm-global-info + gmm-global-init-from-feats: /usr/local/bin/gmm-global-init-from-feats + gmm-global-sum-accs: /usr/local/bin/gmm-global-sum-accs + gmm-global-to-fgmm: /usr/local/bin/gmm-global-to-fgmm + gmm-gselect: /usr/local/bin/gmm-gselect + gmm-info: /usr/local/bin/gmm-info + gmm-init-biphone: /usr/local/bin/gmm-init-biphone + gmm-init-lvtln: /usr/local/bin/gmm-init-lvtln + gmm-init-model: /usr/local/bin/gmm-init-model + gmm-init-model-flat: /usr/local/bin/gmm-init-model-flat + gmm-init-mono: /usr/local/bin/gmm-init-mono + gmm-ismooth-stats: /usr/local/bin/gmm-ismooth-stats + gmm-latgen-biglm-faster: /usr/local/bin/gmm-latgen-biglm-faster + gmm-latgen-faster: /usr/local/bin/gmm-latgen-faster + gmm-latgen-faster-parallel: /usr/local/bin/gmm-latgen-faster-parallel + gmm-latgen-faster-regtree-fmllr: + /usr/local/bin/gmm-latgen-faster-regtree-fmllr + gmm-latgen-map: /usr/local/bin/gmm-latgen-map + gmm-latgen-simple: /usr/local/bin/gmm-latgen-simple + gmm-make-regtree: /usr/local/bin/gmm-make-regtree + gmm-mixup: /usr/local/bin/gmm-mixup + gmm-post-to-gpost: /usr/local/bin/gmm-post-to-gpost + gmm-rescore-lattice: /usr/local/bin/gmm-rescore-lattice + gmm-sum-accs: /usr/local/bin/gmm-sum-accs + gmm-train-lvtln-special: /usr/local/bin/gmm-train-lvtln-special + gmm-transform-means: /usr/local/bin/gmm-transform-means + gmm-transform-means-global: /usr/local/bin/gmm-transform-means-global + hmm-info: /usr/local/bin/hmm-info + interpolate-pitch: /usr/local/bin/interpolate-pitch + ivector-adapt-plda: /usr/local/bin/ivector-adapt-plda + ivector-compute-dot-products: /usr/local/bin/ivector-compute-dot-products + ivector-compute-lda: /usr/local/bin/ivector-compute-lda + ivector-compute-plda: /usr/local/bin/ivector-compute-plda + ivector-copy-plda: /usr/local/bin/ivector-copy-plda + ivector-extract: /usr/local/bin/ivector-extract + ivector-extract-online: /usr/local/bin/ivector-extract-online + ivector-extract-online2: /usr/local/bin/ivector-extract-online2 + ivector-extractor-acc-stats: /usr/local/bin/ivector-extractor-acc-stats + ivector-extractor-copy: /usr/local/bin/ivector-extractor-copy + ivector-extractor-est: /usr/local/bin/ivector-extractor-est + ivector-extractor-init: /usr/local/bin/ivector-extractor-init + ivector-extractor-sum-accs: /usr/local/bin/ivector-extractor-sum-accs + ivector-mean: /usr/local/bin/ivector-mean + ivector-normalize-length: /usr/local/bin/ivector-normalize-length + ivector-plda-scoring: /usr/local/bin/ivector-plda-scoring + ivector-plda-scoring-dense: /usr/local/bin/ivector-plda-scoring-dense + ivector-randomize: /usr/local/bin/ivector-randomize + ivector-subtract-global-mean: /usr/local/bin/ivector-subtract-global-mean + ivector-transform: /usr/local/bin/ivector-transform + kws-index-union: /usr/local/bin/kws-index-union + kws-search: /usr/local/bin/kws-search + latgen-faster-mapped: /usr/local/bin/latgen-faster-mapped + latgen-faster-mapped-parallel: /usr/local/bin/latgen-faster-mapped-parallel + latgen-incremental-mapped: /usr/local/bin/latgen-incremental-mapped + lattice-1best: /usr/local/bin/lattice-1best + lattice-add-nnlmscore: /usr/local/bin/lattice-add-nnlmscore + lattice-add-penalty: /usr/local/bin/lattice-add-penalty + lattice-add-trans-probs: /usr/local/bin/lattice-add-trans-probs + lattice-align-phones: /usr/local/bin/lattice-align-phones + lattice-align-words: /usr/local/bin/lattice-align-words + lattice-align-words-lexicon: /usr/local/bin/lattice-align-words-lexicon + lattice-arc-post: /usr/local/bin/lattice-arc-post + lattice-best-path: /usr/local/bin/lattice-best-path + lattice-boost-ali: /usr/local/bin/lattice-boost-ali + lattice-combine: /usr/local/bin/lattice-combine + lattice-compose: /usr/local/bin/lattice-compose + lattice-confidence: /usr/local/bin/lattice-confidence + lattice-copy: /usr/local/bin/lattice-copy + lattice-copy-backoff: /usr/local/bin/lattice-copy-backoff + lattice-depth: /usr/local/bin/lattice-depth + lattice-depth-per-frame: /usr/local/bin/lattice-depth-per-frame + lattice-determinize: /usr/local/bin/lattice-determinize + lattice-determinize-non-compact: + /usr/local/bin/lattice-determinize-non-compact + lattice-determinize-phone-pruned: + /usr/local/bin/lattice-determinize-phone-pruned + lattice-determinize-phone-pruned-parallel: + /usr/local/bin/lattice-determinize-phone-pruned-parallel + lattice-determinize-pruned: /usr/local/bin/lattice-determinize-pruned + lattice-determinize-pruned-parallel: + /usr/local/bin/lattice-determinize-pruned-parallel + lattice-difference: /usr/local/bin/lattice-difference + lattice-equivalent: /usr/local/bin/lattice-equivalent + lattice-expand: /usr/local/bin/lattice-expand + lattice-expand-ngram: /usr/local/bin/lattice-expand-ngram + lattice-interp: /usr/local/bin/lattice-interp + lattice-limit-depth: /usr/local/bin/lattice-limit-depth + lattice-lmrescore: /usr/local/bin/lattice-lmrescore + lattice-lmrescore-const-arpa: /usr/local/bin/lattice-lmrescore-const-arpa + lattice-lmrescore-kaldi-rnnlm: /usr/local/bin/lattice-lmrescore-kaldi-rnnlm + lattice-lmrescore-kaldi-rnnlm-pruned: + /usr/local/bin/lattice-lmrescore-kaldi-rnnlm-pruned + lattice-lmrescore-pruned: /usr/local/bin/lattice-lmrescore-pruned + lattice-lmrescore-rnnlm: /usr/local/bin/lattice-lmrescore-rnnlm + lattice-mbr-decode: /usr/local/bin/lattice-mbr-decode + lattice-minimize: /usr/local/bin/lattice-minimize + lattice-oracle: /usr/local/bin/lattice-oracle + lattice-path-cover: /usr/local/bin/lattice-path-cover + lattice-project: /usr/local/bin/lattice-project + lattice-prune: /usr/local/bin/lattice-prune + lattice-push: /usr/local/bin/lattice-push + lattice-rescore-mapped: /usr/local/bin/lattice-rescore-mapped + lattice-reverse: /usr/local/bin/lattice-reverse + lattice-rmali: /usr/local/bin/lattice-rmali + lattice-scale: /usr/local/bin/lattice-scale + lattice-to-ctm-conf: /usr/local/bin/lattice-to-ctm-conf + lattice-to-fst: /usr/local/bin/lattice-to-fst + lattice-to-kws-index: /usr/local/bin/lattice-to-kws-index + lattice-to-mpe-post: /usr/local/bin/lattice-to-mpe-post + lattice-to-nbest: /usr/local/bin/lattice-to-nbest + lattice-to-phone-lattice: /usr/local/bin/lattice-to-phone-lattice + lattice-to-post: /usr/local/bin/lattice-to-post + lattice-to-smbr-post: /usr/local/bin/lattice-to-smbr-post + lattice-union: /usr/local/bin/lattice-union + linear-to-nbest: /usr/local/bin/linear-to-nbest + logistic-regression-copy: /usr/local/bin/logistic-regression-copy + logistic-regression-eval: /usr/local/bin/logistic-regression-eval + logistic-regression-train: /usr/local/bin/logistic-regression-train + logprob-to-post: /usr/local/bin/logprob-to-post + make-grammar-fst: /usr/local/bin/make-grammar-fst + make-h-transducer: /usr/local/bin/make-h-transducer + make-ilabel-transducer: /usr/local/bin/make-ilabel-transducer + make-pdf-to-tid-transducer: /usr/local/bin/make-pdf-to-tid-transducer + matrix-dim: /usr/local/bin/matrix-dim + matrix-max: /usr/local/bin/matrix-max + matrix-sum: /usr/local/bin/matrix-sum + matrix-sum-rows: /usr/local/bin/matrix-sum-rows + merge-vads: /usr/local/bin/merge-vads + mfa: /usr/local/bin/mfa + mfa_update: /usr/local/bin/mfa_update + modify-cmvn-stats: /usr/local/bin/modify-cmvn-stats + mpdtcompose: /usr/local/bin/mpdtcompose + mpdtexpand: /usr/local/bin/mpdtexpand + mpdtinfo: /usr/local/bin/mpdtinfo + mpdtreverse: /usr/local/bin/mpdtreverse + multiply-vectors: /usr/local/bin/multiply-vectors + nbest-to-ctm: /usr/local/bin/nbest-to-ctm + nbest-to-lattice: /usr/local/bin/nbest-to-lattice + nbest-to-linear: /usr/local/bin/nbest-to-linear + nbest-to-prons: /usr/local/bin/nbest-to-prons + ngramapply: /usr/local/bin/ngramapply + ngramcontext: /usr/local/bin/ngramcontext + ngramcount: /usr/local/bin/ngramcount + ngramhisttest: /usr/local/bin/ngramhisttest + ngraminfo: /usr/local/bin/ngraminfo + ngrammake: /usr/local/bin/ngrammake + ngrammarginalize: /usr/local/bin/ngrammarginalize + ngrammerge: /usr/local/bin/ngrammerge + ngramperplexity: /usr/local/bin/ngramperplexity + ngramprint: /usr/local/bin/ngramprint + ngramrandgen: /usr/local/bin/ngramrandgen + ngramrandtest: /usr/local/bin/ngramrandtest + ngramread: /usr/local/bin/ngramread + ngramshrink: /usr/local/bin/ngramshrink + ngramsort: /usr/local/bin/ngramsort + ngramsplit: /usr/local/bin/ngramsplit + ngramsymbols: /usr/local/bin/ngramsymbols + ngramtransfer: /usr/local/bin/ngramtransfer + nnet-adjust-priors: /usr/local/bin/nnet-adjust-priors + nnet-align-compiled: /usr/local/bin/nnet-align-compiled + nnet-am-average: /usr/local/bin/nnet-am-average + nnet-am-compute: /usr/local/bin/nnet-am-compute + nnet-am-copy: /usr/local/bin/nnet-am-copy + nnet-am-fix: /usr/local/bin/nnet-am-fix + nnet-am-info: /usr/local/bin/nnet-am-info + nnet-am-init: /usr/local/bin/nnet-am-init + nnet-am-mixup: /usr/local/bin/nnet-am-mixup + nnet-am-reinitialize: /usr/local/bin/nnet-am-reinitialize + nnet-am-switch-preconditioning: /usr/local/bin/nnet-am-switch-preconditioning + nnet-am-widen: /usr/local/bin/nnet-am-widen + nnet-combine: /usr/local/bin/nnet-combine + nnet-combine-egs-discriminative: + /usr/local/bin/nnet-combine-egs-discriminative + nnet-combine-fast: /usr/local/bin/nnet-combine-fast + nnet-compare-hash-discriminative: + /usr/local/bin/nnet-compare-hash-discriminative + nnet-compute: /usr/local/bin/nnet-compute + nnet-compute-from-egs: /usr/local/bin/nnet-compute-from-egs + nnet-compute-prob: /usr/local/bin/nnet-compute-prob + nnet-concat: /usr/local/bin/nnet-concat + nnet-copy: /usr/local/bin/nnet-copy + nnet-copy-egs: /usr/local/bin/nnet-copy-egs + nnet-copy-egs-discriminative: /usr/local/bin/nnet-copy-egs-discriminative + nnet-forward: /usr/local/bin/nnet-forward + nnet-get-egs: /usr/local/bin/nnet-get-egs + nnet-get-egs-discriminative: /usr/local/bin/nnet-get-egs-discriminative + nnet-get-feature-transform: /usr/local/bin/nnet-get-feature-transform + nnet-get-feature-transform-multi: + /usr/local/bin/nnet-get-feature-transform-multi + nnet-get-weighted-egs: /usr/local/bin/nnet-get-weighted-egs + nnet-info: /usr/local/bin/nnet-info + nnet-init: /usr/local/bin/nnet-init + nnet-initialize: /usr/local/bin/nnet-initialize + nnet-insert: /usr/local/bin/nnet-insert + nnet-latgen-faster: /usr/local/bin/nnet-latgen-faster + nnet-latgen-faster-parallel: /usr/local/bin/nnet-latgen-faster-parallel + nnet-modify-learning-rates: /usr/local/bin/nnet-modify-learning-rates + nnet-normalize-stddev: /usr/local/bin/nnet-normalize-stddev + nnet-relabel-egs: /usr/local/bin/nnet-relabel-egs + nnet-replace-last-layers: /usr/local/bin/nnet-replace-last-layers + nnet-set-learnrate: /usr/local/bin/nnet-set-learnrate + nnet-show-progress: /usr/local/bin/nnet-show-progress + nnet-shuffle-egs: /usr/local/bin/nnet-shuffle-egs + nnet-shuffle-egs-discriminative: + /usr/local/bin/nnet-shuffle-egs-discriminative + nnet-subset-egs: /usr/local/bin/nnet-subset-egs + nnet-to-raw-nnet: /usr/local/bin/nnet-to-raw-nnet + nnet-train-discriminative-parallel: + /usr/local/bin/nnet-train-discriminative-parallel + nnet-train-discriminative-simple: + /usr/local/bin/nnet-train-discriminative-simple + nnet-train-ensemble: /usr/local/bin/nnet-train-ensemble + nnet-train-frmshuff: /usr/local/bin/nnet-train-frmshuff + nnet-train-mmi-sequential: /usr/local/bin/nnet-train-mmi-sequential + nnet-train-mpe-sequential: /usr/local/bin/nnet-train-mpe-sequential + nnet-train-multistream: /usr/local/bin/nnet-train-multistream + nnet-train-multistream-perutt: /usr/local/bin/nnet-train-multistream-perutt + nnet-train-parallel: /usr/local/bin/nnet-train-parallel + nnet-train-perutt: /usr/local/bin/nnet-train-perutt + nnet-train-simple: /usr/local/bin/nnet-train-simple + nnet-train-transitions: /usr/local/bin/nnet-train-transitions + nnet1-to-raw-nnet: /usr/local/bin/nnet1-to-raw-nnet + nnet3-acc-lda-stats: /usr/local/bin/nnet3-acc-lda-stats + nnet3-align-compiled: /usr/local/bin/nnet3-align-compiled + nnet3-am-adjust-priors: /usr/local/bin/nnet3-am-adjust-priors + nnet3-am-copy: /usr/local/bin/nnet3-am-copy + nnet3-am-info: /usr/local/bin/nnet3-am-info + nnet3-am-init: /usr/local/bin/nnet3-am-init + nnet3-am-train-transitions: /usr/local/bin/nnet3-am-train-transitions + nnet3-average: /usr/local/bin/nnet3-average + nnet3-chain-acc-lda-stats: /usr/local/bin/nnet3-chain-acc-lda-stats + nnet3-chain-add-post-to-egs: /usr/local/bin/nnet3-chain-add-post-to-egs + nnet3-chain-combine: /usr/local/bin/nnet3-chain-combine + nnet3-chain-combine2: /usr/local/bin/nnet3-chain-combine2 + nnet3-chain-compute-post: /usr/local/bin/nnet3-chain-compute-post + nnet3-chain-compute-prob: /usr/local/bin/nnet3-chain-compute-prob + nnet3-chain-copy-egs: /usr/local/bin/nnet3-chain-copy-egs + nnet3-chain-e2e-get-egs: /usr/local/bin/nnet3-chain-e2e-get-egs + nnet3-chain-get-egs: /usr/local/bin/nnet3-chain-get-egs + nnet3-chain-merge-egs: /usr/local/bin/nnet3-chain-merge-egs + nnet3-chain-normalize-egs: /usr/local/bin/nnet3-chain-normalize-egs + nnet3-chain-shuffle-egs: /usr/local/bin/nnet3-chain-shuffle-egs + nnet3-chain-subset-egs: /usr/local/bin/nnet3-chain-subset-egs + nnet3-chain-train: /usr/local/bin/nnet3-chain-train + nnet3-chain-train2: /usr/local/bin/nnet3-chain-train2 + nnet3-combine: /usr/local/bin/nnet3-combine + nnet3-compute: /usr/local/bin/nnet3-compute + nnet3-compute-batch: /usr/local/bin/nnet3-compute-batch + nnet3-compute-from-egs: /usr/local/bin/nnet3-compute-from-egs + nnet3-compute-prob: /usr/local/bin/nnet3-compute-prob + nnet3-copy: /usr/local/bin/nnet3-copy + nnet3-copy-egs: /usr/local/bin/nnet3-copy-egs + nnet3-discriminative-compute-from-egs: + /usr/local/bin/nnet3-discriminative-compute-from-egs + nnet3-discriminative-compute-objf: + /usr/local/bin/nnet3-discriminative-compute-objf + nnet3-discriminative-copy-egs: /usr/local/bin/nnet3-discriminative-copy-egs + nnet3-discriminative-get-egs: /usr/local/bin/nnet3-discriminative-get-egs + nnet3-discriminative-merge-egs: /usr/local/bin/nnet3-discriminative-merge-egs + nnet3-discriminative-shuffle-egs: + /usr/local/bin/nnet3-discriminative-shuffle-egs + nnet3-discriminative-subset-egs: + /usr/local/bin/nnet3-discriminative-subset-egs + nnet3-discriminative-train: /usr/local/bin/nnet3-discriminative-train + nnet3-egs-augment-image: /usr/local/bin/nnet3-egs-augment-image + nnet3-get-egs: /usr/local/bin/nnet3-get-egs + nnet3-get-egs-dense-targets: /usr/local/bin/nnet3-get-egs-dense-targets + nnet3-get-egs-simple: /usr/local/bin/nnet3-get-egs-simple + nnet3-info: /usr/local/bin/nnet3-info + nnet3-init: /usr/local/bin/nnet3-init + nnet3-latgen-faster: /usr/local/bin/nnet3-latgen-faster + nnet3-latgen-faster-batch: /usr/local/bin/nnet3-latgen-faster-batch + nnet3-latgen-faster-lookahead: /usr/local/bin/nnet3-latgen-faster-lookahead + nnet3-latgen-faster-looped: /usr/local/bin/nnet3-latgen-faster-looped + nnet3-latgen-faster-looped-parallel: + /usr/local/bin/nnet3-latgen-faster-looped-parallel + nnet3-latgen-faster-parallel: /usr/local/bin/nnet3-latgen-faster-parallel + nnet3-latgen-grammar: /usr/local/bin/nnet3-latgen-grammar + nnet3-merge-egs: /usr/local/bin/nnet3-merge-egs + nnet3-show-progress: /usr/local/bin/nnet3-show-progress + nnet3-shuffle-egs: /usr/local/bin/nnet3-shuffle-egs + nnet3-subset-egs: /usr/local/bin/nnet3-subset-egs + nnet3-train: /usr/local/bin/nnet3-train + nnet3-xvector-compute: /usr/local/bin/nnet3-xvector-compute + nnet3-xvector-compute-batched: /usr/local/bin/nnet3-xvector-compute-batched + nnet3-xvector-get-egs: /usr/local/bin/nnet3-xvector-get-egs + online-audio-client: /usr/local/bin/online-audio-client + online-audio-server-decode-faster: + /usr/local/bin/online-audio-server-decode-faster + online-gmm-decode-faster: /usr/local/bin/online-gmm-decode-faster + online-net-client: /usr/local/bin/online-net-client + online-server-gmm-decode-faster: + /usr/local/bin/online-server-gmm-decode-faster + online-wav-gmm-decode-faster: /usr/local/bin/online-wav-gmm-decode-faster + online2-tcp-nnet3-decode-faster: + /usr/local/bin/online2-tcp-nnet3-decode-faster + online2-tcp-nnet3-decode-faster-emscripten: + /usr/local/bin/online2-tcp-nnet3-decode-faster-emscripten + online2-wav-dump-features: /usr/local/bin/online2-wav-dump-features + online2-wav-gmm-latgen-faster: /usr/local/bin/online2-wav-gmm-latgen-faster + online2-wav-nnet2-am-compute: /usr/local/bin/online2-wav-nnet2-am-compute + online2-wav-nnet2-latgen-faster: + /usr/local/bin/online2-wav-nnet2-latgen-faster + online2-wav-nnet2-latgen-threaded: + /usr/local/bin/online2-wav-nnet2-latgen-threaded + online2-wav-nnet3-latgen-faster: + /usr/local/bin/online2-wav-nnet3-latgen-faster + online2-wav-nnet3-latgen-grammar: + /usr/local/bin/online2-wav-nnet3-latgen-grammar + online2-wav-nnet3-latgen-incremental: + /usr/local/bin/online2-wav-nnet3-latgen-incremental + online2-wav-nnet3-wake-word-decoder-faster: + /usr/local/bin/online2-wav-nnet3-wake-word-decoder-faster + paste-feats: /usr/local/bin/paste-feats + paste-post: /usr/local/bin/paste-post + paste-vectors: /usr/local/bin/paste-vectors + pdtcompose: /usr/local/bin/pdtcompose + pdtexpand: /usr/local/bin/pdtexpand + pdtinfo: /usr/local/bin/pdtinfo + pdtreplace: /usr/local/bin/pdtreplace + pdtreverse: /usr/local/bin/pdtreverse + pdtshortestpath: /usr/local/bin/pdtshortestpath + pg_combinebackup: /usr/local/bin/pg_combinebackup + pg_createsubscriber: /usr/local/bin/pg_createsubscriber + pg_walsummary: /usr/local/bin/pg_walsummary + phones-to-prons: /usr/local/bin/phones-to-prons + play: /usr/local/bin/play + post-to-feats: /usr/local/bin/post-to-feats + post-to-pdf-post: /usr/local/bin/post-to-pdf-post + post-to-phone-post: /usr/local/bin/post-to-phone-post + post-to-smat: /usr/local/bin/post-to-smat + post-to-tacc: /usr/local/bin/post-to-tacc + post-to-weights: /usr/local/bin/post-to-weights + print-proxy-keywords: /usr/local/bin/print-proxy-keywords + prob-to-post: /usr/local/bin/prob-to-post + process-kaldi-pitch-feats: /usr/local/bin/process-kaldi-pitch-feats + process-pitch-feats: /usr/local/bin/process-pitch-feats + prons-to-wordali: /usr/local/bin/prons-to-wordali + raw-nnet-concat: /usr/local/bin/raw-nnet-concat + raw-nnet-copy: /usr/local/bin/raw-nnet-copy + raw-nnet-info: /usr/local/bin/raw-nnet-info + rbm-convert-to-nnet: /usr/local/bin/rbm-convert-to-nnet + rbm-train-cd1-frmshuff: /usr/local/bin/rbm-train-cd1-frmshuff + rec: /usr/local/bin/rec + rnnlm-compute-prob: /usr/local/bin/rnnlm-compute-prob + rnnlm-get-egs: /usr/local/bin/rnnlm-get-egs + rnnlm-get-sampling-lm: /usr/local/bin/rnnlm-get-sampling-lm + rnnlm-get-word-embedding: /usr/local/bin/rnnlm-get-word-embedding + rnnlm-sentence-probs: /usr/local/bin/rnnlm-sentence-probs + rnnlm-train: /usr/local/bin/rnnlm-train + scale-post: /usr/local/bin/scale-post + sdl2-config: /usr/local/bin/sdl2-config + select-feats: /usr/local/bin/select-feats + select-voiced-frames: /usr/local/bin/select-voiced-frames + shift-feats: /usr/local/bin/shift-feats + show-alignments: /usr/local/bin/show-alignments + show-transitions: /usr/local/bin/show-transitions + sox: /usr/local/bin/sox + soxi: /usr/local/bin/soxi + spirv-as: /usr/local/bin/spirv-as + spirv-cfg: /usr/local/bin/spirv-cfg + spirv-diff: /usr/local/bin/spirv-diff + spirv-dis: /usr/local/bin/spirv-dis + spirv-lesspipe.sh: /usr/local/bin/spirv-lesspipe.sh + spirv-link: /usr/local/bin/spirv-link + spirv-lint: /usr/local/bin/spirv-lint + spirv-objdump: /usr/local/bin/spirv-objdump + spirv-opt: /usr/local/bin/spirv-opt + spirv-reduce: /usr/local/bin/spirv-reduce + spirv-val: /usr/local/bin/spirv-val + splice-feats: /usr/local/bin/splice-feats + subsample-feats: /usr/local/bin/subsample-feats + subset-feats: /usr/local/bin/subset-feats + sum-lda-accs: /usr/local/bin/sum-lda-accs + sum-matrices: /usr/local/bin/sum-matrices + sum-mllt-accs: /usr/local/bin/sum-mllt-accs + sum-post: /usr/local/bin/sum-post + sum-tree-stats: /usr/local/bin/sum-tree-stats + train-transitions: /usr/local/bin/train-transitions + transcripts-to-fsts: /usr/local/bin/transcripts-to-fsts + transf-to-nnet: /usr/local/bin/transf-to-nnet + transform-feats: /usr/local/bin/transform-feats + transform-vec: /usr/local/bin/transform-vec + tree-info: /usr/local/bin/tree-info + vector-scale: /usr/local/bin/vector-scale + vector-sum: /usr/local/bin/vector-sum + wav-copy: /usr/local/bin/wav-copy + wav-reverberate: /usr/local/bin/wav-reverberate + wav-to-duration: /usr/local/bin/wav-to-duration + weight-post: /usr/local/bin/weight-post + weight-silence-post: /usr/local/bin/weight-silence-post + gtk-builder-tool: /usr/local/bin/gtk-builder-tool + gtk-encode-symbolic-svg: /usr/local/bin/gtk-encode-symbolic-svg + gtk-launch: /usr/local/bin/gtk-launch + gtk-query-immodules-3.0: /usr/local/bin/gtk-query-immodules-3.0 + gtk-query-settings: /usr/local/bin/gtk-query-settings + cllayerinfo: /usr/local/bin/cllayerinfo + pax11publish: /usr/local/bin/pax11publish + vpxdec: /usr/local/bin/vpxdec + vpxenc: /usr/local/bin/vpxenc + protoc-31.1.0: /usr/local/bin/protoc-31.1.0 + protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0 + protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0 + ffmpeg: /usr/local/bin/ffmpeg + ffprobe: /usr/local/bin/ffprobe + h264dec: /usr/local/bin/h264dec + h264enc: /usr/local/bin/h264enc + x264: /usr/local/bin/x264 + ldapadd: /usr/local/bin/ldapadd + ldapcompare: /usr/local/bin/ldapcompare + ldapdelete: /usr/local/bin/ldapdelete + ldapexop: /usr/local/bin/ldapexop + ldapmodify: /usr/local/bin/ldapmodify + ldapmodrdn: /usr/local/bin/ldapmodrdn + ldappasswd: /usr/local/bin/ldappasswd + ldapsearch: /usr/local/bin/ldapsearch diff --git a/quay.io/biocontainers/panchip/container.yaml b/quay.io/biocontainers/panchip/container.yaml new file mode 100644 index 0000000000000..27fb6461cc471 --- /dev/null +++ b/quay.io/biocontainers/panchip/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/panchip +maintainer: '@vsoch' +description: singularity registry hpc automated addition for panchip +latest: + 3.0.14--py312h7e72e81_0: + sha256:813a4da1c26b61b4daa8ef892c21062281e24705ae5ac0e321ced0e8005b7483 +tags: + 3.0.14--py312h7e72e81_0: + sha256:813a4da1c26b61b4daa8ef892c21062281e24705ae5ac0e321ced0e8005b7483 +docker: quay.io/biocontainers/panchip +aliases: + panchip: /usr/local/bin/panchip + bash: /usr/local/bin/bash + bashbug: /usr/local/bin/bashbug + gawk-5.3.1: /usr/local/bin/gawk-5.3.1 + gawkbug: /usr/local/bin/gawkbug + basenc: /usr/local/bin/basenc + b2sum: /usr/local/bin/b2sum + ls: /usr/local/bin/ls + base32: /usr/local/bin/base32 + base64: /usr/local/bin/base64 + basename: /usr/local/bin/basename + cat: /usr/local/bin/cat + chcon: /usr/local/bin/chcon + chgrp: /usr/local/bin/chgrp + chmod: /usr/local/bin/chmod + chown: /usr/local/bin/chown + chroot: /usr/local/bin/chroot + cksum: /usr/local/bin/cksum + comm: /usr/local/bin/comm + cp: /usr/local/bin/cp + csplit: /usr/local/bin/csplit + cut: /usr/local/bin/cut + date: /usr/local/bin/date + dd: /usr/local/bin/dd + df: /usr/local/bin/df + dir: /usr/local/bin/dir diff --git a/quay.io/biocontainers/perl-bio-monophylizer/container.yaml b/quay.io/biocontainers/perl-bio-monophylizer/container.yaml new file mode 100644 index 0000000000000..aebc22fcf8299 --- /dev/null +++ b/quay.io/biocontainers/perl-bio-monophylizer/container.yaml @@ -0,0 +1,38 @@ +url: https://biocontainers.pro/tools/perl-bio-monophylizer +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + perl-bio-monophylizer +latest: + 1.0.0--hdfd78af_0: + sha256:48bc185cd8c69ec021839aeb0fe5c89c35b0f53ec2946b8594ac97c3cc4c41e5 +tags: + 1.0.0--hdfd78af_0: + sha256:48bc185cd8c69ec021839aeb0fe5c89c35b0f53ec2946b8594ac97c3cc4c41e5 +docker: quay.io/biocontainers/perl-bio-monophylizer +aliases: + monophylizer.pl: /usr/local/bin/monophylizer.pl + imgsize: /usr/local/bin/imgsize + xml_grep: /usr/local/bin/xml_grep + xml_merge: /usr/local/bin/xml_merge + xml_pp: /usr/local/bin/xml_pp + xml_spellcheck: /usr/local/bin/xml_spellcheck + xml_split: /usr/local/bin/xml_split + webtidy: /usr/local/bin/webtidy + tidyp: /usr/local/bin/tidyp + tpage: /usr/local/bin/tpage + ttree: /usr/local/bin/ttree + bdf2gdfont.pl: /usr/local/bin/bdf2gdfont.pl + htmltree: /usr/local/bin/htmltree + lwp-download: /usr/local/bin/lwp-download + lwp-dump: /usr/local/bin/lwp-dump + lwp-mirror: /usr/local/bin/lwp-mirror + lwp-request: /usr/local/bin/lwp-request + bdftogd: /usr/local/bin/bdftogd + gd2copypal: /usr/local/bin/gd2copypal + gd2togif: /usr/local/bin/gd2togif + gd2topng: /usr/local/bin/gd2topng + gdcmpgif: /usr/local/bin/gdcmpgif + gdparttopng: /usr/local/bin/gdparttopng + gdtopng: /usr/local/bin/gdtopng + giftogd2: /usr/local/bin/giftogd2 + pngtogd: /usr/local/bin/pngtogd diff --git a/quay.io/biocontainers/scatac-fragment-tools/container.yaml b/quay.io/biocontainers/scatac-fragment-tools/container.yaml new file mode 100644 index 0000000000000..446bbfbe0eca3 --- /dev/null +++ b/quay.io/biocontainers/scatac-fragment-tools/container.yaml @@ -0,0 +1,38 @@ +url: https://biocontainers.pro/tools/scatac-fragment-tools +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + scatac-fragment-tools +latest: + 0.1.4--py310h9e6395a_0: + sha256:ab59ea7241bda97a92ef9a5e9b3ac08f841dd962089bdab9488abec65ccfa60c +tags: + 0.1.4--py310h9e6395a_0: + sha256:ab59ea7241bda97a92ef9a5e9b3ac08f841dd962089bdab9488abec65ccfa60c +docker: quay.io/biocontainers/scatac-fragment-tools +aliases: + scatac_fragment_tools: /usr/local/bin/scatac_fragment_tools + h2benchmark: /usr/local/bin/h2benchmark + protoc-31.1.0: /usr/local/bin/protoc-31.1.0 + protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0 + protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0 + checksum-profile: /usr/local/bin/checksum-profile + elastishadow: /usr/local/bin/elastishadow + protoc-gen-upb: /usr/local/bin/protoc-gen-upb + protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs + elastipubsub5: /usr/local/bin/elastipubsub5 + mqtt5_app: /usr/local/bin/mqtt5_app + mqtt5_canary: /usr/local/bin/mqtt5_canary + mqtt5canary: /usr/local/bin/mqtt5canary + elasticurl: /usr/local/bin/elasticurl + elasticurl_cpp: /usr/local/bin/elasticurl_cpp + elastipubsub: /usr/local/bin/elastipubsub + csv-import: /usr/local/bin/csv-import + orc-memory: /usr/local/bin/orc-memory + orc-scan: /usr/local/bin/orc-scan + timezone-dump: /usr/local/bin/timezone-dump + orc-contents: /usr/local/bin/orc-contents + orc-metadata: /usr/local/bin/orc-metadata + orc-statistics: /usr/local/bin/orc-statistics + gflags_completions.sh: /usr/local/bin/gflags_completions.sh + markdown-it: /usr/local/bin/markdown-it + grpc_cpp_plugin: /usr/local/bin/grpc_cpp_plugin diff --git a/quay.io/biocontainers/sglearn/container.yaml b/quay.io/biocontainers/sglearn/container.yaml new file mode 100644 index 0000000000000..d06e9f744f971 --- /dev/null +++ b/quay.io/biocontainers/sglearn/container.yaml @@ -0,0 +1,18 @@ +url: https://biocontainers.pro/tools/sglearn +maintainer: '@vsoch' +description: singularity registry hpc automated addition for sglearn +latest: + 1.2.5--pyhdfd78af_0: + sha256:6a16b07e32d9900787c0cb56ea8871889f2d28b371749a7e6280289263e1cad0 +tags: + 1.2.5--pyhdfd78af_0: + sha256:6a16b07e32d9900787c0cb56ea8871889f2d28b371749a7e6280289263e1cad0 +docker: quay.io/biocontainers/sglearn +aliases: + seqfold: /usr/local/bin/seqfold + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + numpy-config: /usr/local/bin/numpy-config + tqdm: /usr/local/bin/tqdm diff --git a/quay.io/biocontainers/viralrecall/container.yaml b/quay.io/biocontainers/viralrecall/container.yaml new file mode 100644 index 0000000000000..5a2ff1d20eff2 --- /dev/null +++ b/quay.io/biocontainers/viralrecall/container.yaml @@ -0,0 +1,39 @@ +url: https://biocontainers.pro/tools/viralrecall +maintainer: '@vsoch' +description: singularity registry hpc automated addition for viralrecall +latest: + 3.0.1--pyhdfd78af_0: + sha256:2593fecd6f8213fa591ca4ed0df6d30f48edcca7e22455cf4e3d09918868c1e8 +tags: + 3.0.1--pyhdfd78af_0: + sha256:2593fecd6f8213fa591ca4ed0df6d30f48edcca7e22455cf4e3d09918868c1e8 +docker: quay.io/biocontainers/viralrecall +aliases: + pyrodigal-gv: /usr/local/bin/pyrodigal-gv + viralrecall: /usr/local/bin/viralrecall + viralrecall_database: /usr/local/bin/viralrecall_database + archspec: /usr/local/bin/archspec + pyrodigal: /usr/local/bin/pyrodigal + vcf_sample_filter.py: /usr/local/bin/vcf_sample_filter.py + vcf_filter.py: /usr/local/bin/vcf_filter.py + vcf_melt: /usr/local/bin/vcf_melt + faidx: /usr/local/bin/faidx + qconvex: /usr/local/bin/qconvex + qdelaunay: /usr/local/bin/qdelaunay + qhalf: /usr/local/bin/qhalf + qhull: /usr/local/bin/qhull + qvoronoi: /usr/local/bin/qvoronoi + rbox: /usr/local/bin/rbox + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config + fonttools: /usr/local/bin/fonttools + pyftmerge: /usr/local/bin/pyftmerge + pyftsubset: /usr/local/bin/pyftsubset + ttx: /usr/local/bin/ttx + brotli: /usr/local/bin/brotli + normalizer: /usr/local/bin/normalizer + tjbench: /usr/local/bin/tjbench + opj_compress: /usr/local/bin/opj_compress