diff --git a/quay.io/biocontainers/atol-annotation-report/container.yaml b/quay.io/biocontainers/atol-annotation-report/container.yaml new file mode 100644 index 0000000000000..2477a954ae747 --- /dev/null +++ b/quay.io/biocontainers/atol-annotation-report/container.yaml @@ -0,0 +1,18 @@ +url: https://biocontainers.pro/tools/atol-annotation-report +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + atol-annotation-report +latest: + 0.1.1--pyhdfd78af_0: + sha256:ba4c5245319748cc3d7a0360db31f3a34fcdccedbb24255803516e2b42e3eeef +tags: + 0.1.1--pyhdfd78af_0: + sha256:ba4c5245319748cc3d7a0360db31f3a34fcdccedbb24255803516e2b42e3eeef +docker: quay.io/biocontainers/atol-annotation-report +aliases: + atol-annotation-report: /usr/local/bin/atol-annotation-report + 2to3-3.12: /usr/local/bin/2to3-3.12 + idle3.12: /usr/local/bin/idle3.12 + pydoc3.12: /usr/local/bin/pydoc3.12 + python3.12: /usr/local/bin/python3.12 + python3.12-config: /usr/local/bin/python3.12-config diff --git a/quay.io/biocontainers/bacprune/container.yaml b/quay.io/biocontainers/bacprune/container.yaml new file mode 100644 index 0000000000000..699b2c329dfdd --- /dev/null +++ b/quay.io/biocontainers/bacprune/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/bacprune +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bacprune +latest: + 0.9.0--h4349ce8_0: + sha256:7983dde92a1f40851e1c110b5dbec5b61e0c60f8ef500f5199a42bb41839b447 +tags: + 0.9.0--h4349ce8_0: + sha256:7983dde92a1f40851e1c110b5dbec5b61e0c60f8ef500f5199a42bb41839b447 +docker: quay.io/biocontainers/bacprune +aliases: + bacprune: /usr/local/bin/bacprune diff --git a/quay.io/biocontainers/bam-tide/container.yaml b/quay.io/biocontainers/bam-tide/container.yaml new file mode 100644 index 0000000000000..f53cb4f84c7a2 --- /dev/null +++ b/quay.io/biocontainers/bam-tide/container.yaml @@ -0,0 +1,20 @@ +url: https://biocontainers.pro/tools/bam-tide +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bam-tide +latest: + 1.2.3--hdaf81d9_0: + sha256:7123c8c72bb12c48120763d6432a9fccbd88194c6f4ae9feb51d15e3cd7750eb +tags: + 1.2.3--hdaf81d9_0: + sha256:7123c8c72bb12c48120763d6432a9fccbd88194c6f4ae9feb51d15e3cd7750eb +docker: quay.io/biocontainers/bam-tide +aliases: + bam-coverage: /usr/local/bin/bam-coverage + bam-quant: /usr/local/bin/bam-quant + bam-subset-tag: /usr/local/bin/bam-subset-tag + bw-compare: /usr/local/bin/bw-compare + ref-cache: /usr/local/bin/ref-cache + annot-tsv: /usr/local/bin/annot-tsv + htsfile: /usr/local/bin/htsfile + bgzip: /usr/local/bin/bgzip + tabix: /usr/local/bin/tabix diff --git a/quay.io/biocontainers/bioconductor-islify/container.yaml b/quay.io/biocontainers/bioconductor-islify/container.yaml new file mode 100644 index 0000000000000..4f087b09f7d2a --- /dev/null +++ b/quay.io/biocontainers/bioconductor-islify/container.yaml @@ -0,0 +1,36 @@ +url: https://biocontainers.pro/tools/bioconductor-islify +maintainer: '@vsoch' +description: singularity registry hpc automated addition for bioconductor-islify +latest: + 1.2.0--r45hdfd78af_0: + sha256:079606b291702abd80ab14e2883567707a3858eb7b21db9f46131cd995aeed71 +tags: + 1.2.0--r45hdfd78af_0: + sha256:079606b291702abd80ab14e2883567707a3858eb7b21db9f46131cd995aeed71 +docker: quay.io/biocontainers/bioconductor-islify +aliases: + jnativescan: /usr/local/bin/jnativescan + hb-raster: /usr/local/bin/hb-raster + hb-vector: /usr/local/bin/hb-vector + jwebserver: /usr/local/bin/jwebserver + pandoc-lua: /usr/local/bin/pandoc-lua + pandoc-server: /usr/local/bin/pandoc-server + jpackage: /usr/local/bin/jpackage + fftw-wisdom: /usr/local/bin/fftw-wisdom + fftw-wisdom-to-conf: /usr/local/bin/fftw-wisdom-to-conf + fftwf-wisdom: /usr/local/bin/fftwf-wisdom + fftwl-wisdom: /usr/local/bin/fftwl-wisdom + cups-config: /usr/local/bin/cups-config + ippeveprinter: /usr/local/bin/ippeveprinter + ipptool: /usr/local/bin/ipptool + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + pandoc: /usr/local/bin/pandoc + jfr: /usr/local/bin/jfr + jdeprscan: /usr/local/bin/jdeprscan + jhsdb: /usr/local/bin/jhsdb + jimage: /usr/local/bin/jimage + jlink: /usr/local/bin/jlink + jmod: /usr/local/bin/jmod + jshell: /usr/local/bin/jshell + aserver: /usr/local/bin/aserver + jdeps: /usr/local/bin/jdeps diff --git a/quay.io/biocontainers/biofastq-a/container.yaml b/quay.io/biocontainers/biofastq-a/container.yaml new file mode 100644 index 0000000000000..b2e6868fac37d --- /dev/null +++ b/quay.io/biocontainers/biofastq-a/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/biofastq-a +maintainer: '@vsoch' +description: singularity registry hpc automated addition for biofastq-a +latest: + 2.2.0--h4349ce8_0: + sha256:89ddc22438578f1d0a6bd73c32d7f1da3309e031eb729bbd73fe3acdea4cae6d +tags: + 2.2.0--h4349ce8_0: + sha256:89ddc22438578f1d0a6bd73c32d7f1da3309e031eb729bbd73fe3acdea4cae6d +docker: quay.io/biocontainers/biofastq-a +aliases: + biofastq-a: /usr/local/bin/biofastq-a diff --git a/quay.io/biocontainers/cycsim/container.yaml b/quay.io/biocontainers/cycsim/container.yaml new file mode 100644 index 0000000000000..2bbbd89b8f884 --- /dev/null +++ b/quay.io/biocontainers/cycsim/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/cycsim +maintainer: '@vsoch' +description: singularity registry hpc automated addition for cycsim +latest: + 1.0.4--h4eafe19_0: + sha256:9970b472772bb99782875e4c823db546dbac57a0fcb288ac1ac53687d26c07a9 +tags: + 1.0.4--h4eafe19_0: + sha256:9970b472772bb99782875e4c823db546dbac57a0fcb288ac1ac53687d26c07a9 +docker: quay.io/biocontainers/cycsim +aliases: + cycsim: /usr/local/bin/cycsim diff --git a/quay.io/biocontainers/decodiphy/container.yaml b/quay.io/biocontainers/decodiphy/container.yaml new file mode 100644 index 0000000000000..9c36678ef6f82 --- /dev/null +++ b/quay.io/biocontainers/decodiphy/container.yaml @@ -0,0 +1,17 @@ +url: https://biocontainers.pro/tools/decodiphy +maintainer: '@vsoch' +description: singularity registry hpc automated addition for decodiphy +latest: + 1.2.3--pyhdfd78af_0: + sha256:caef315da2b290f91952a7a4a221fc1a991da7fdcebb596a549e6641ff008838 +tags: + 1.2.3--pyhdfd78af_0: + sha256:caef315da2b290f91952a7a4a221fc1a991da7fdcebb596a549e6641ff008838 +docker: quay.io/biocontainers/decodiphy +aliases: + decodiphy: /usr/local/bin/decodiphy + 2to3-3.12: /usr/local/bin/2to3-3.12 + idle3.12: /usr/local/bin/idle3.12 + pydoc3.12: /usr/local/bin/pydoc3.12 + python3.12: /usr/local/bin/python3.12 + python3.12-config: /usr/local/bin/python3.12-config diff --git a/quay.io/biocontainers/eggs/container.yaml b/quay.io/biocontainers/eggs/container.yaml new file mode 100644 index 0000000000000..0e413003c5b5f --- /dev/null +++ b/quay.io/biocontainers/eggs/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/eggs +maintainer: '@vsoch' +description: singularity registry hpc automated addition for eggs +latest: + 1.0.0--hb7acf71_0: + sha256:f8c24644062f61167c6e110a6c55b0c35dfa47aa0b16a17a39567130a1d78ad3 +tags: + 1.0.0--hb7acf71_0: + sha256:f8c24644062f61167c6e110a6c55b0c35dfa47aa0b16a17a39567130a1d78ad3 +docker: quay.io/biocontainers/eggs +aliases: + eggs: /usr/local/bin/eggs diff --git a/quay.io/biocontainers/fg-stitch/container.yaml b/quay.io/biocontainers/fg-stitch/container.yaml new file mode 100644 index 0000000000000..8966b5028837d --- /dev/null +++ b/quay.io/biocontainers/fg-stitch/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/fg-stitch +maintainer: '@vsoch' +description: singularity registry hpc automated addition for fg-stitch +latest: + 0.1.2--h54198d6_0: + sha256:a707e0e19a73a3da135c269f2bd4df3b77b6a4beaf19b3ce04ad5dc77d4387d0 +tags: + 0.1.2--h54198d6_0: + sha256:a707e0e19a73a3da135c269f2bd4df3b77b6a4beaf19b3ce04ad5dc77d4387d0 +docker: quay.io/biocontainers/fg-stitch +aliases: + stitch: /usr/local/bin/stitch diff --git a/quay.io/biocontainers/genomemask/container.yaml b/quay.io/biocontainers/genomemask/container.yaml new file mode 100644 index 0000000000000..d8e5e91281d53 --- /dev/null +++ b/quay.io/biocontainers/genomemask/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/genomemask +maintainer: '@vsoch' +description: singularity registry hpc automated addition for genomemask +latest: + 0.0.3--hd612981_0: + sha256:3447c77df2d6dc8c2836ebc572b9c7b8136bc5df67b570a8898a1f7c5ce23bb5 +tags: + 0.0.3--hd612981_0: + sha256:3447c77df2d6dc8c2836ebc572b9c7b8136bc5df67b570a8898a1f7c5ce23bb5 +docker: quay.io/biocontainers/genomemask +aliases: + genomemask: /usr/local/bin/genomemask diff --git a/quay.io/biocontainers/grit-genomics/container.yaml b/quay.io/biocontainers/grit-genomics/container.yaml new file mode 100644 index 0000000000000..2d0ab49dc00ba --- /dev/null +++ b/quay.io/biocontainers/grit-genomics/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/grit-genomics +maintainer: '@vsoch' +description: singularity registry hpc automated addition for grit-genomics +latest: + 0.1.1--h79ce301_0: + sha256:bf5df0db36c16f32dbb6558fd04a4f0f4a3ebc867a8986bf0fb9149e0dd037a5 +tags: + 0.1.1--h79ce301_0: + sha256:bf5df0db36c16f32dbb6558fd04a4f0f4a3ebc867a8986bf0fb9149e0dd037a5 +docker: quay.io/biocontainers/grit-genomics +aliases: + grit: /usr/local/bin/grit diff --git a/quay.io/biocontainers/haplophaser/container.yaml b/quay.io/biocontainers/haplophaser/container.yaml new file mode 100644 index 0000000000000..6004e1c03e926 --- /dev/null +++ b/quay.io/biocontainers/haplophaser/container.yaml @@ -0,0 +1,38 @@ +url: https://biocontainers.pro/tools/haplophaser +maintainer: '@vsoch' +description: singularity registry hpc automated addition for haplophaser +latest: + 0.1.1--pyhdfd78af_0: + sha256:6ac9e135da73daedfd2c0393a1aee53818bc243e008539666b120cf7631b4743 +tags: + 0.1.1--pyhdfd78af_0: + sha256:6ac9e135da73daedfd2c0393a1aee53818bc243e008539666b120cf7631b4743 +docker: quay.io/biocontainers/haplophaser +aliases: + chromoplot: /usr/local/bin/chromoplot + haplophaser: /usr/local/bin/haplophaser + cyvcf2: /usr/local/bin/cyvcf2 + typer: /usr/local/bin/typer + ref-cache: /usr/local/bin/ref-cache + coloredlogs: /usr/local/bin/coloredlogs + humanfriendly: /usr/local/bin/humanfriendly + markdown-it: /usr/local/bin/markdown-it + annot-tsv: /usr/local/bin/annot-tsv + qconvex: /usr/local/bin/qconvex + qdelaunay: /usr/local/bin/qdelaunay + qhalf: /usr/local/bin/qhalf + qhull: /usr/local/bin/qhull + qvoronoi: /usr/local/bin/qvoronoi + rbox: /usr/local/bin/rbox + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + pygmentize: /usr/local/bin/pygmentize + numpy-config: /usr/local/bin/numpy-config + fonttools: /usr/local/bin/fonttools + pyftmerge: /usr/local/bin/pyftmerge + pyftsubset: /usr/local/bin/pyftsubset + ttx: /usr/local/bin/ttx + brotli: /usr/local/bin/brotli + htsfile: /usr/local/bin/htsfile diff --git a/quay.io/biocontainers/metalcoordanalysis/container.yaml b/quay.io/biocontainers/metalcoordanalysis/container.yaml new file mode 100644 index 0000000000000..54ce4a3fa7b80 --- /dev/null +++ b/quay.io/biocontainers/metalcoordanalysis/container.yaml @@ -0,0 +1,19 @@ +url: https://biocontainers.pro/tools/metalcoordanalysis +maintainer: '@vsoch' +description: singularity registry hpc automated addition for metalcoordanalysis +latest: + 0.2.13--pyhdfd78af_0: + sha256:704f9cfc833e46e62a7dfc10c3292f43a5e368c542b9a70bceb441902a6ef110 +tags: + 0.2.13--pyhdfd78af_0: + sha256:704f9cfc833e46e62a7dfc10c3292f43a5e368c542b9a70bceb441902a6ef110 +docker: quay.io/biocontainers/metalcoordanalysis +aliases: + gemmi: /usr/local/bin/gemmi + metalCoord: /usr/local/bin/metalCoord + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + numpy-config: /usr/local/bin/numpy-config + tqdm: /usr/local/bin/tqdm diff --git a/quay.io/biocontainers/metasmash/container.yaml b/quay.io/biocontainers/metasmash/container.yaml new file mode 100644 index 0000000000000..432b55af4c112 --- /dev/null +++ b/quay.io/biocontainers/metasmash/container.yaml @@ -0,0 +1,51 @@ +url: https://biocontainers.pro/tools/metasmash +maintainer: '@vsoch' +description: singularity registry hpc automated addition for metasmash +latest: + 0.1.0--pyhdfd78af_0: + sha256:7d4bafb9952292119fef53f58b09c7ef26cb7282c7c766793fc02b194012b918 +tags: + 0.1.0--pyhdfd78af_0: + sha256:7d4bafb9952292119fef53f58b09c7ef26cb7282c7c766793fc02b194012b918 +docker: quay.io/biocontainers/metasmash +aliases: + brawn: /usr/local/bin/brawn + download-antismash-databases: /usr/local/bin/download-antismash-databases + hmmalign2: /usr/local/bin/hmmalign2 + hmmbuild2: /usr/local/bin/hmmbuild2 + hmmcalibrate2: /usr/local/bin/hmmcalibrate2 + hmmconvert2: /usr/local/bin/hmmconvert2 + hmmemit2: /usr/local/bin/hmmemit2 + hmmfetch2: /usr/local/bin/hmmfetch2 + hmmindex2: /usr/local/bin/hmmindex2 + hmmpfam2: /usr/local/bin/hmmpfam2 + hmmsearch2: /usr/local/bin/hmmsearch2 + metasmash: /usr/local/bin/metasmash + moods-dna.py: /usr/local/bin/moods-dna.py + pysassc: /usr/local/bin/pysassc + archive-nlmnlp: /usr/local/bin/archive-nlmnlp + archive-pids: /usr/local/bin/archive-pids + download-flatfile: /usr/local/bin/download-flatfile + ecollect: /usr/local/bin/ecollect + gbf2facds: /usr/local/bin/gbf2facds + gbf2tbl: /usr/local/bin/gbf2tbl + gff-sort: /usr/local/bin/gff-sort + gff2xml: /usr/local/bin/gff2xml + pair-at-a-time: /usr/local/bin/pair-at-a-time + print-missing-subranges: /usr/local/bin/print-missing-subranges + sort-by-length: /usr/local/bin/sort-by-length + xcommon.sh: /usr/local/bin/xcommon.sh + xfetch: /usr/local/bin/xfetch + xfetch.ini: /usr/local/bin/xfetch.ini + xfilter: /usr/local/bin/xfilter + xinfo: /usr/local/bin/xinfo + xlink: /usr/local/bin/xlink + xlink.ini: /usr/local/bin/xlink.ini + xsearch: /usr/local/bin/xsearch + aggregate_scores_in_intervals.py: + /usr/local/bin/aggregate_scores_in_intervals.py + align_print_template.py: /usr/local/bin/align_print_template.py + axt_extract_ranges.py: /usr/local/bin/axt_extract_ranges.py + axt_to_fasta.py: /usr/local/bin/axt_to_fasta.py + axt_to_lav.py: /usr/local/bin/axt_to_lav.py + axt_to_maf.py: /usr/local/bin/axt_to_maf.py diff --git a/quay.io/biocontainers/mnbc-me/container.yaml b/quay.io/biocontainers/mnbc-me/container.yaml new file mode 100644 index 0000000000000..91f601f173a1c --- /dev/null +++ b/quay.io/biocontainers/mnbc-me/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/mnbc-me +maintainer: '@vsoch' +description: singularity registry hpc automated addition for mnbc-me +latest: + 1.0--hdfd78af_0: + sha256:97f329919df352ff17737c4df076bd0d768b5361a78c3aa2401fcca318d70eee +tags: + 1.0--hdfd78af_0: + sha256:97f329919df352ff17737c4df076bd0d768b5361a78c3aa2401fcca318d70eee +docker: quay.io/biocontainers/mnbc-me +aliases: + mnbc-me: /usr/local/bin/mnbc-me + jnativescan: /usr/local/bin/jnativescan + hb-raster: /usr/local/bin/hb-raster + hb-vector: /usr/local/bin/hb-vector + jwebserver: /usr/local/bin/jwebserver + jpackage: /usr/local/bin/jpackage + cups-config: /usr/local/bin/cups-config + ippeveprinter: /usr/local/bin/ippeveprinter + ipptool: /usr/local/bin/ipptool + jfr: /usr/local/bin/jfr + jdeprscan: /usr/local/bin/jdeprscan + jhsdb: /usr/local/bin/jhsdb + jimage: /usr/local/bin/jimage + jlink: /usr/local/bin/jlink + jmod: /usr/local/bin/jmod + jshell: /usr/local/bin/jshell + aserver: /usr/local/bin/aserver + jdeps: /usr/local/bin/jdeps + jar: /usr/local/bin/jar + jarsigner: /usr/local/bin/jarsigner + java: /usr/local/bin/java + javac: /usr/local/bin/javac + javadoc: /usr/local/bin/javadoc + javap: /usr/local/bin/javap + jcmd: /usr/local/bin/jcmd + jconsole: /usr/local/bin/jconsole diff --git a/quay.io/biocontainers/ohe-rs/container.yaml b/quay.io/biocontainers/ohe-rs/container.yaml new file mode 100644 index 0000000000000..5f14026bc0aae --- /dev/null +++ b/quay.io/biocontainers/ohe-rs/container.yaml @@ -0,0 +1,17 @@ +url: https://biocontainers.pro/tools/ohe-rs +maintainer: '@vsoch' +description: singularity registry hpc automated addition for ohe-rs +latest: + 0.1.0--py310h7e03b2b_0: + sha256:d111374e330acd6b4853fb7f59295984e5b9f3b63547bf18e902446a2454366a +tags: + 0.1.0--py310h7e03b2b_0: + sha256:d111374e330acd6b4853fb7f59295984e5b9f3b63547bf18e902446a2454366a +docker: quay.io/biocontainers/ohe-rs +aliases: + numpy-config: /usr/local/bin/numpy-config + 2to3-3.10: /usr/local/bin/2to3-3.10 + idle3.10: /usr/local/bin/idle3.10 + pydoc3.10: /usr/local/bin/pydoc3.10 + python3.10: /usr/local/bin/python3.10 + python3.10-config: /usr/local/bin/python3.10-config diff --git a/quay.io/biocontainers/panmap/container.yaml b/quay.io/biocontainers/panmap/container.yaml new file mode 100644 index 0000000000000..4b2616094e58b --- /dev/null +++ b/quay.io/biocontainers/panmap/container.yaml @@ -0,0 +1,38 @@ +url: https://biocontainers.pro/tools/panmap +maintainer: '@vsoch' +description: singularity registry hpc automated addition for panmap +latest: + 0.1.1--0: + sha256:d248c32dfa84bf82ed7632bb9e142e4bb9c4c6f940a0d94512f20ed8d00cbe04 +tags: + 0.1.1--0: + sha256:d248c32dfa84bf82ed7632bb9e142e4bb9c4c6f940a0d94512f20ed8d00cbe04 +docker: quay.io/biocontainers/panmap +aliases: + panmanUtils: /usr/local/bin/panmanUtils + panmap: /usr/local/bin/panmap + protoc-31.1.0: /usr/local/bin/protoc-31.1.0 + protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0 + protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0 + protoc-gen-upb: /usr/local/bin/protoc-gen-upb + protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs + capnp: /usr/local/bin/capnp + capnpc: /usr/local/bin/capnpc + capnpc-c++: /usr/local/bin/capnpc-c++ + capnpc-capnp: /usr/local/bin/capnpc-capnp + ref-cache: /usr/local/bin/ref-cache + annot-tsv: /usr/local/bin/annot-tsv + hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid + hwloc-annotate: /usr/local/bin/hwloc-annotate + hwloc-bind: /usr/local/bin/hwloc-bind + hwloc-calc: /usr/local/bin/hwloc-calc + hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir + hwloc-diff: /usr/local/bin/hwloc-diff + hwloc-distrib: /usr/local/bin/hwloc-distrib + hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology + hwloc-info: /usr/local/bin/hwloc-info + hwloc-ls: /usr/local/bin/hwloc-ls + hwloc-patch: /usr/local/bin/hwloc-patch + hwloc-ps: /usr/local/bin/hwloc-ps + lstopo: /usr/local/bin/lstopo + lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics diff --git a/quay.io/biocontainers/peek-bio/container.yaml b/quay.io/biocontainers/peek-bio/container.yaml new file mode 100644 index 0000000000000..213f4d27f5b3f --- /dev/null +++ b/quay.io/biocontainers/peek-bio/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/peek-bio +maintainer: '@vsoch' +description: singularity registry hpc automated addition for peek-bio +latest: + 0.1.0--pyhdfd78af_0: + sha256:e9064e17425a35fdad00026c9f308da7d9ae8e440dc8402d035611416ac993cd +tags: + 0.1.0--pyhdfd78af_0: + sha256:e9064e17425a35fdad00026c9f308da7d9ae8e440dc8402d035611416ac993cd +docker: quay.io/biocontainers/peek-bio +aliases: + peek: /usr/local/bin/peek + zarr: /usr/local/bin/zarr + h2benchmark: /usr/local/bin/h2benchmark + checksum-profile: /usr/local/bin/checksum-profile + elasticurl: /usr/local/bin/elasticurl + natsort: /usr/local/bin/natsort + h5delete: /usr/local/bin/h5delete + 2to3-3.12: /usr/local/bin/2to3-3.12 + idle3.12: /usr/local/bin/idle3.12 + pydoc3.12: /usr/local/bin/pydoc3.12 + python3.12: /usr/local/bin/python3.12 + python3.12-config: /usr/local/bin/python3.12-config + numpy-config: /usr/local/bin/numpy-config + h5fc: /usr/local/bin/h5fc + h5c++: /usr/local/bin/h5c++ + h5cc: /usr/local/bin/h5cc + h5clear: /usr/local/bin/h5clear + h5format_convert: /usr/local/bin/h5format_convert + h5watch: /usr/local/bin/h5watch + h5copy: /usr/local/bin/h5copy + h5debug: /usr/local/bin/h5debug + h5diff: /usr/local/bin/h5diff + h5import: /usr/local/bin/h5import + h5jam: /usr/local/bin/h5jam + h5ls: /usr/local/bin/h5ls + h5mkgrp: /usr/local/bin/h5mkgrp diff --git a/quay.io/biocontainers/platonyzer/container.yaml b/quay.io/biocontainers/platonyzer/container.yaml new file mode 100644 index 0000000000000..a9acf1eecab70 --- /dev/null +++ b/quay.io/biocontainers/platonyzer/container.yaml @@ -0,0 +1,16 @@ +url: https://biocontainers.pro/tools/platonyzer +maintainer: '@vsoch' +description: singularity registry hpc automated addition for platonyzer +latest: + 2.0.5--hf426362_0: + sha256:de1524a49b969b4411d41ddd18f10d7200a75f1465ebda0987ec26897a07884e +tags: + 2.0.5--hf426362_0: + sha256:de1524a49b969b4411d41ddd18f10d7200a75f1465ebda0987ec26897a07884e +docker: quay.io/biocontainers/platonyzer +aliases: + platonyzer: /usr/local/bin/platonyzer + x86_64-conda-linux-gnu-pkg-config: + /usr/local/bin/x86_64-conda-linux-gnu-pkg-config + pkg-config: /usr/local/bin/pkg-config + pkg-config.bin: /usr/local/bin/pkg-config.bin diff --git a/quay.io/biocontainers/proact/container.yaml b/quay.io/biocontainers/proact/container.yaml new file mode 100644 index 0000000000000..6263da0d69daf --- /dev/null +++ b/quay.io/biocontainers/proact/container.yaml @@ -0,0 +1,115 @@ +url: https://biocontainers.pro/tools/proact +maintainer: '@vsoch' +description: singularity registry hpc automated addition for proact +latest: + 1.0--pyhdfd78af_0: + sha256:7e37aedfd4da8f2d8572e1d63834a45ca762baaa107ecd51adb41ce4c54fb7f1 +tags: + 1.0--pyhdfd78af_0: + sha256:7e37aedfd4da8f2d8572e1d63834a45ca762baaa107ecd51adb41ce4c54fb7f1 +docker: quay.io/biocontainers/proact +aliases: + alignrandom.sh: /usr/local/bin/alignrandom.sh + bamlinestreamer.sh: /usr/local/bin/bamlinestreamer.sh + bandedaligner.sh: /usr/local/bin/bandedaligner.sh + bandedplusaligner.sh: /usr/local/bin/bandedplusaligner.sh + bbdukOld.sh: /usr/local/bin/bbdukOld.sh + bbdukS.sh: /usr/local/bin/bbdukS.sh + cat.sh: /usr/local/bin/cat.sh + cbcl2text.sh: /usr/local/bin/cbcl2text.sh + cg2illumina.sh: /usr/local/bin/cg2illumina.sh + cladeloader.sh: /usr/local/bin/cladeloader.sh + cladeserver.sh: /usr/local/bin/cladeserver.sh + cloudplot.sh: /usr/local/bin/cloudplot.sh + comparelabels.sh: /usr/local/bin/comparelabels.sh + covmaker.sh: /usr/local/bin/covmaker.sh + crosscutaligner.sh: /usr/local/bin/crosscutaligner.sh + ddlcalibrate.sh: /usr/local/bin/ddlcalibrate.sh + demuxserver.sh: /usr/local/bin/demuxserver.sh + driftingaligner.sh: /usr/local/bin/driftingaligner.sh + driftingplusaligner.sh: /usr/local/bin/driftingplusaligner.sh + fastqscan.sh: /usr/local/bin/fastqscan.sh + filescan.sh: /usr/local/bin/filescan.sh + fix_script_paths.sh: /usr/local/bin/fix_script_paths.sh + glocalaligner.sh: /usr/local/bin/glocalaligner.sh + gradebins.sh: /usr/local/bin/gradebins.sh + indelfree.sh: /usr/local/bin/indelfree.sh + javasetup.sh: /usr/local/bin/javasetup.sh + kmercountshort.sh: /usr/local/bin/kmercountshort.sh + lowcomplexcalibrate.sh: /usr/local/bin/lowcomplexcalibrate.sh + makequickbinvector.sh: /usr/local/bin/makequickbinvector.sh + memdetect.sh: /usr/local/bin/memdetect.sh + microalign.sh: /usr/local/bin/microalign.sh + novademux.sh: /usr/local/bin/novademux.sh + parallelogram.sh: /usr/local/bin/parallelogram.sh + picksubset.sh: /usr/local/bin/picksubset.sh + pileup2.sh: /usr/local/bin/pileup2.sh + plothist.sh: /usr/local/bin/plothist.sh + plotreadposition.sh: /usr/local/bin/plotreadposition.sh + polyfilter.sh: /usr/local/bin/polyfilter.sh + proact: /usr/local/bin/proact + proact-calculate-ptoh: /usr/local/bin/proact-calculate-ptoh + proact-extract-gtdb-mg: /usr/local/bin/proact-extract-gtdb-mg + proact-generate-depth: /usr/local/bin/proact-generate-depth + proact-get-depth: /usr/local/bin/proact-get-depth + profile.sh: /usr/local/bin/profile.sh + quabblealigner.sh: /usr/local/bin/quabblealigner.sh + quantumaligner.sh: /usr/local/bin/quantumaligner.sh + quickbin.sh: /usr/local/bin/quickbin.sh + quickclade.sh: /usr/local/bin/quickclade.sh + randomreadsmg.sh: /usr/local/bin/randomreadsmg.sh + reassemble.sh: /usr/local/bin/reassemble.sh + reducecolumns.sh: /usr/local/bin/reducecolumns.sh + reformat2.sh: /usr/local/bin/reformat2.sh + reformat3.sh: /usr/local/bin/reformat3.sh + renamebymapping.sh: /usr/local/bin/renamebymapping.sh + renamebysketch.sh: /usr/local/bin/renamebysketch.sh + renameref.sh: /usr/local/bin/renameref.sh + rqcfilter3.sh: /usr/local/bin/rqcfilter3.sh + samstreamer.sh: /usr/local/bin/samstreamer.sh + scalarintervals.sh: /usr/local/bin/scalarintervals.sh + scalars.sh: /usr/local/bin/scalars.sh + scrabblealigner.sh: /usr/local/bin/scrabblealigner.sh + sendclade.sh: /usr/local/bin/sendclade.sh + smithwaterman.sh: /usr/local/bin/smithwaterman.sh + stats3.sh: /usr/local/bin/stats3.sh + stream.sh: /usr/local/bin/stream.sh + tagandmerge.sh: /usr/local/bin/tagandmerge.sh + testaligners.sh: /usr/local/bin/testaligners.sh + testaligners2.sh: /usr/local/bin/testaligners2.sh + testalignersbatch.sh: /usr/local/bin/testalignersbatch.sh + testalignerslength.sh: /usr/local/bin/testalignerslength.sh + tiledump.sh: /usr/local/bin/tiledump.sh + trimcontigs.sh: /usr/local/bin/trimcontigs.sh + visualizealignment.sh: /usr/local/bin/visualizealignment.sh + wavefrontaligner.sh: /usr/local/bin/wavefrontaligner.sh + wavefrontalignerviz.sh: /usr/local/bin/wavefrontalignerviz.sh + wobblealigner.sh: /usr/local/bin/wobblealigner.sh + wobbleplusaligner.sh: /usr/local/bin/wobbleplusaligner.sh + xdrophaligner.sh: /usr/local/bin/xdrophaligner.sh + zz_rename_package.sh: /usr/local/bin/zz_rename_package.sh + bbcrisprfinder.sh: /usr/local/bin/bbcrisprfinder.sh + bbsort.sh: /usr/local/bin/bbsort.sh + checkstrand.sh: /usr/local/bin/checkstrand.sh + copyfile.sh: /usr/local/bin/copyfile.sh + countbarcodes2.sh: /usr/local/bin/countbarcodes2.sh + countduplicates.sh: /usr/local/bin/countduplicates.sh + findrepeats.sh: /usr/local/bin/findrepeats.sh + netfilter.sh: /usr/local/bin/netfilter.sh + scoresequence.sh: /usr/local/bin/scoresequence.sh + seqtovec.sh: /usr/local/bin/seqtovec.sh + train.sh: /usr/local/bin/train.sh + bloomfilterparser.sh: /usr/local/bin/bloomfilterparser.sh + jnativescan: /usr/local/bin/jnativescan + kmutate.sh: /usr/local/bin/kmutate.sh + runhmm.sh: /usr/local/bin/runhmm.sh + kmerposition.sh: /usr/local/bin/kmerposition.sh + reformatpb.sh: /usr/local/bin/reformatpb.sh + summarizecoverage.sh: /usr/local/bin/summarizecoverage.sh + alltoall.sh: /usr/local/bin/alltoall.sh + analyzesketchresults.sh: /usr/local/bin/analyzesketchresults.sh + comparessu.sh: /usr/local/bin/comparessu.sh + filtersilva.sh: /usr/local/bin/filtersilva.sh + sketchblacklist2.sh: /usr/local/bin/sketchblacklist2.sh + splitribo.sh: /usr/local/bin/splitribo.sh + addssu.sh: /usr/local/bin/addssu.sh diff --git a/quay.io/biocontainers/probord/container.yaml b/quay.io/biocontainers/probord/container.yaml new file mode 100644 index 0000000000000..ebb3efdb6e5ab --- /dev/null +++ b/quay.io/biocontainers/probord/container.yaml @@ -0,0 +1,38 @@ +url: https://biocontainers.pro/tools/probord +maintainer: '@vsoch' +description: singularity registry hpc automated addition for probord +latest: + 1.0--pyhdfd78af_1: + sha256:19c96c526f362b75360c05726e5b84511adddb5742f8df1774ca62f07ae89589 +tags: + 1.0--pyhdfd78af_1: + sha256:19c96c526f362b75360c05726e5b84511adddb5742f8df1774ca62f07ae89589 +docker: quay.io/biocontainers/probord +aliases: + checkv: /usr/local/bin/checkv + probord: /usr/local/bin/probord + gimme_taxa.py: /usr/local/bin/gimme_taxa.py + prodigal-gv: /usr/local/bin/prodigal-gv + ncbi-genome-download: /usr/local/bin/ncbi-genome-download + ngd: /usr/local/bin/ngd + archive-ncbinlp: /usr/local/bin/archive-ncbinlp + fetch-local: /usr/local/bin/fetch-local + fetch-nmcds: /usr/local/bin/fetch-nmcds + fetch-pmc: /usr/local/bin/fetch-pmc + fetch-taxonomy: /usr/local/bin/fetch-taxonomy + stream-local: /usr/local/bin/stream-local + bsmp2info: /usr/local/bin/bsmp2info + fsa2xml: /usr/local/bin/fsa2xml + gbf2info: /usr/local/bin/gbf2info + just-top-hits: /usr/local/bin/just-top-hits + systematic-mutations: /usr/local/bin/systematic-mutations + shmemrun: /usr/local/bin/shmemrun + archive-nihocc: /usr/local/bin/archive-nihocc + archive-nmcds: /usr/local/bin/archive-nmcds + archive-pmc: /usr/local/bin/archive-pmc + archive-taxonomy: /usr/local/bin/archive-taxonomy + args2slice: /usr/local/bin/args2slice + asn2ref: /usr/local/bin/asn2ref + blst2gm: /usr/local/bin/blst2gm + cit2pmid: /usr/local/bin/cit2pmid + combine-uid-lists: /usr/local/bin/combine-uid-lists diff --git a/quay.io/biocontainers/r-clustermole/container.yaml b/quay.io/biocontainers/r-clustermole/container.yaml new file mode 100644 index 0000000000000..1b5228aac8547 --- /dev/null +++ b/quay.io/biocontainers/r-clustermole/container.yaml @@ -0,0 +1,36 @@ +url: https://biocontainers.pro/tools/r-clustermole +maintainer: '@vsoch' +description: singularity registry hpc automated addition for r-clustermole +latest: + 1.1.1--r45h3121a25_0: + sha256:f81b23a30f513301f096028a2c1ee7d8a1d5eef3dc9a2964f86dc1c6a45422ce +tags: + 1.1.1--r45h3121a25_0: + sha256:f81b23a30f513301f096028a2c1ee7d8a1d5eef3dc9a2964f86dc1c6a45422ce +docker: quay.io/biocontainers/r-clustermole +aliases: + dec265: /usr/local/bin/dec265 + dot_sandbox: /usr/local/bin/dot_sandbox + hb-raster: /usr/local/bin/hb-raster + hb-vector: /usr/local/bin/hb-vector + gtk-builder-tool: /usr/local/bin/gtk-builder-tool + gtk-encode-symbolic-svg: /usr/local/bin/gtk-encode-symbolic-svg + gtk-launch: /usr/local/bin/gtk-launch + gtk-query-immodules-3.0: /usr/local/bin/gtk-query-immodules-3.0 + gtk-query-settings: /usr/local/bin/gtk-query-settings + x265: /usr/local/bin/x265 + wayland-scanner: /usr/local/bin/wayland-scanner + SvtAv1EncApp: /usr/local/bin/SvtAv1EncApp + dav1d: /usr/local/bin/dav1d + gi-compile-repository: /usr/local/bin/gi-compile-repository + gi-decompile-typelib: /usr/local/bin/gi-decompile-typelib + gi-inspect-typelib: /usr/local/bin/gi-inspect-typelib + aomdec: /usr/local/bin/aomdec + aomenc: /usr/local/bin/aomenc + Magick++-config: /usr/local/bin/Magick++-config + MagickCore-config: /usr/local/bin/MagickCore-config + MagickWand-config: /usr/local/bin/MagickWand-config + animate: /usr/local/bin/animate + composite: /usr/local/bin/composite + conjure: /usr/local/bin/conjure + display: /usr/local/bin/display diff --git a/quay.io/biocontainers/r-deepkin/container.yaml b/quay.io/biocontainers/r-deepkin/container.yaml new file mode 100644 index 0000000000000..6ec51bb9297c1 --- /dev/null +++ b/quay.io/biocontainers/r-deepkin/container.yaml @@ -0,0 +1,15 @@ +url: https://biocontainers.pro/tools/r-deepkin +maintainer: '@vsoch' +description: singularity registry hpc automated addition for r-deepkin +latest: + 1.0.0--r45hdfd78af_0: + sha256:55571ed675e19dc52bdebb662737b82bca2f9ec02cfc462a7ef8ce6a00edffeb +tags: + 1.0.0--r45hdfd78af_0: + sha256:55571ed675e19dc52bdebb662737b82bca2f9ec02cfc462a7ef8ce6a00edffeb +docker: quay.io/biocontainers/r-deepkin +aliases: + hb-raster: /usr/local/bin/hb-raster + hb-vector: /usr/local/bin/hb-vector + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + hb-info: /usr/local/bin/hb-info diff --git a/quay.io/biocontainers/r-ldsr/container.yaml b/quay.io/biocontainers/r-ldsr/container.yaml new file mode 100644 index 0000000000000..0cebf512f1a07 --- /dev/null +++ b/quay.io/biocontainers/r-ldsr/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/r-ldsr +maintainer: '@vsoch' +description: singularity registry hpc automated addition for r-ldsr +latest: + 0.4.0--r44hdfd78af_0: + sha256:e7b3876513d045b66efb4751c9394d06e8a53a2d3c2ca1c7e57c58f02ca112b7 +tags: + 0.4.0--r44hdfd78af_0: + sha256:e7b3876513d045b66efb4751c9394d06e8a53a2d3c2ca1c7e57c58f02ca112b7 +docker: quay.io/biocontainers/r-ldsr +aliases: + protoc-33.5.0: /usr/local/bin/protoc-33.5.0 + protoc-gen-upb-33.5.0: /usr/local/bin/protoc-gen-upb-33.5.0 + protoc-gen-upb_minitable-33.5.0: + /usr/local/bin/protoc-gen-upb_minitable-33.5.0 + protoc-gen-upbdefs-33.5.0: /usr/local/bin/protoc-gen-upbdefs-33.5.0 + protoc-gen-upb_minitable: /usr/local/bin/protoc-gen-upb_minitable + h2benchmark: /usr/local/bin/h2benchmark + hb-raster: /usr/local/bin/hb-raster + hb-vector: /usr/local/bin/hb-vector + elastishadow: /usr/local/bin/elastishadow + checksum-profile: /usr/local/bin/checksum-profile + protoc-gen-upb: /usr/local/bin/protoc-gen-upb + protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs + elastipubsub5: /usr/local/bin/elastipubsub5 + mqtt5_app: /usr/local/bin/mqtt5_app + mqtt5_canary: /usr/local/bin/mqtt5_canary + mqtt5canary: /usr/local/bin/mqtt5canary + elasticurl_cpp: /usr/local/bin/elasticurl_cpp + elastipubsub: /usr/local/bin/elastipubsub + elasticurl: /usr/local/bin/elasticurl + csv-import: /usr/local/bin/csv-import + orc-memory: /usr/local/bin/orc-memory + orc-scan: /usr/local/bin/orc-scan + timezone-dump: /usr/local/bin/timezone-dump + orc-contents: /usr/local/bin/orc-contents + orc-metadata: /usr/local/bin/orc-metadata diff --git a/quay.io/biocontainers/rectify-rna/container.yaml b/quay.io/biocontainers/rectify-rna/container.yaml new file mode 100644 index 0000000000000..401c7a9522dd1 --- /dev/null +++ b/quay.io/biocontainers/rectify-rna/container.yaml @@ -0,0 +1,42 @@ +url: https://biocontainers.pro/tools/rectify-rna +maintainer: '@vsoch' +description: singularity registry hpc automated addition for rectify-rna +latest: + 2.7.8--pyhdfd78af_0: + sha256:ff240b1ea2f63eb180ec8c064ff39ae723c7a975a833f52b022abc335b30a7d5 +tags: + 2.7.8--pyhdfd78af_0: + sha256:ff240b1ea2f63eb180ec8c064ff39ae723c7a975a833f52b022abc335b30a7d5 +docker: quay.io/biocontainers/rectify-rna +aliases: + jlpm: /usr/local/bin/jlpm + jupyter-events: /usr/local/bin/jupyter-events + jupyter-lab: /usr/local/bin/jupyter-lab + jupyter-labextension: /usr/local/bin/jupyter-labextension + jupyter-labhub: /usr/local/bin/jupyter-labhub + rectify: /usr/local/bin/rectify + debugpy-adapter: /usr/local/bin/debugpy-adapter + pyjson5: /usr/local/bin/pyjson5 + jupyter-server: /usr/local/bin/jupyter-server + debugpy: /usr/local/bin/debugpy + jupyter-console: /usr/local/bin/jupyter-console + zarr: /usr/local/bin/zarr + jsonpointer: /usr/local/bin/jsonpointer + wsdump: /usr/local/bin/wsdump + send2trash: /usr/local/bin/send2trash + jupyter-dejavu: /usr/local/bin/jupyter-dejavu + jupyter-execute: /usr/local/bin/jupyter-execute + jupyter-notebook: /usr/local/bin/jupyter-notebook + h2benchmark: /usr/local/bin/h2benchmark + httpx: /usr/local/bin/httpx + jupyter-nbconvert: /usr/local/bin/jupyter-nbconvert + pybabel: /usr/local/bin/pybabel + checksum-profile: /usr/local/bin/checksum-profile + jupyter-kernel: /usr/local/bin/jupyter-kernel + jupyter-kernelspec: /usr/local/bin/jupyter-kernelspec + jupyter-run: /usr/local/bin/jupyter-run + curve_keygen: /usr/local/bin/curve_keygen + ipython3: /usr/local/bin/ipython3 + ipython: /usr/local/bin/ipython + elasticurl: /usr/local/bin/elasticurl + jupyter-trust: /usr/local/bin/jupyter-trust diff --git a/quay.io/biocontainers/sracha/container.yaml b/quay.io/biocontainers/sracha/container.yaml new file mode 100644 index 0000000000000..91f4dd8a52312 --- /dev/null +++ b/quay.io/biocontainers/sracha/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/sracha +maintainer: '@vsoch' +description: singularity registry hpc automated addition for sracha +latest: + 0.3.0--h54198d6_0: + sha256:a1111c1a943a9f87b0e8dc4d42efa5f645fa8660e17ba5a5751b4c0e5a9f5667 +tags: + 0.3.0--h54198d6_0: + sha256:a1111c1a943a9f87b0e8dc4d42efa5f645fa8660e17ba5a5751b4c0e5a9f5667 +docker: quay.io/biocontainers/sracha +aliases: + sracha: /usr/local/bin/sracha diff --git a/quay.io/biocontainers/sriptype/container.yaml b/quay.io/biocontainers/sriptype/container.yaml new file mode 100644 index 0000000000000..16a41f497fbd7 --- /dev/null +++ b/quay.io/biocontainers/sriptype/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/sriptype +maintainer: '@vsoch' +description: singularity registry hpc automated addition for sriptype +latest: + 0.1.0--pyhdfd78af_0: + sha256:d94078bdae0e97dd40176da4ebf2e3caa1ad64f5277c0f05eb2809a9b954fca5 +tags: + 0.1.0--pyhdfd78af_0: + sha256:d94078bdae0e97dd40176da4ebf2e3caa1ad64f5277c0f05eb2809a9b954fca5 +docker: quay.io/biocontainers/sriptype +aliases: + sriptype: /usr/local/bin/sriptype + flash: /usr/local/bin/flash + archive-nlmnlp: /usr/local/bin/archive-nlmnlp + archive-pids: /usr/local/bin/archive-pids + download-flatfile: /usr/local/bin/download-flatfile + ecollect: /usr/local/bin/ecollect + gbf2facds: /usr/local/bin/gbf2facds + gbf2tbl: /usr/local/bin/gbf2tbl + gff-sort: /usr/local/bin/gff-sort + gff2xml: /usr/local/bin/gff2xml + pair-at-a-time: /usr/local/bin/pair-at-a-time + print-missing-subranges: /usr/local/bin/print-missing-subranges + sort-by-length: /usr/local/bin/sort-by-length + xcommon.sh: /usr/local/bin/xcommon.sh + xfetch: /usr/local/bin/xfetch + xfetch.ini: /usr/local/bin/xfetch.ini + xfilter: /usr/local/bin/xfilter + xinfo: /usr/local/bin/xinfo + xlink: /usr/local/bin/xlink + xlink.ini: /usr/local/bin/xlink.ini + xsearch: /usr/local/bin/xsearch + seqkit: /usr/local/bin/seqkit + bsmp2info: /usr/local/bin/bsmp2info + fsa2xml: /usr/local/bin/fsa2xml + gbf2info: /usr/local/bin/gbf2info + just-top-hits: /usr/local/bin/just-top-hits diff --git a/quay.io/biocontainers/staphscope-mlst-data/container.yaml b/quay.io/biocontainers/staphscope-mlst-data/container.yaml new file mode 100644 index 0000000000000..7d827e1fe0d09 --- /dev/null +++ b/quay.io/biocontainers/staphscope-mlst-data/container.yaml @@ -0,0 +1,11 @@ +url: https://biocontainers.pro/tools/staphscope-mlst-data +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + staphscope-mlst-data +latest: + 1.2.0--hdfd78af_1: + sha256:34ad4590c17de910eaa085cab51fff3599ca18bcac730a6099757ba7470c72f0 +tags: + 1.2.0--hdfd78af_1: + sha256:34ad4590c17de910eaa085cab51fff3599ca18bcac730a6099757ba7470c72f0 +docker: quay.io/biocontainers/staphscope-mlst-data diff --git a/quay.io/biocontainers/staphscope-sccmec-data/container.yaml b/quay.io/biocontainers/staphscope-sccmec-data/container.yaml new file mode 100644 index 0000000000000..c4ca1451cd5f8 --- /dev/null +++ b/quay.io/biocontainers/staphscope-sccmec-data/container.yaml @@ -0,0 +1,11 @@ +url: https://biocontainers.pro/tools/staphscope-sccmec-data +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + staphscope-sccmec-data +latest: + 1.2.0--hdfd78af_1: + sha256:131e30a08f04ec1b72f55cb8a8f92ced5fae8946605981dfb68a5d99721708fc +tags: + 1.2.0--hdfd78af_1: + sha256:131e30a08f04ec1b72f55cb8a8f92ced5fae8946605981dfb68a5d99721708fc +docker: quay.io/biocontainers/staphscope-sccmec-data diff --git a/quay.io/biocontainers/strainify/container.yaml b/quay.io/biocontainers/strainify/container.yaml new file mode 100644 index 0000000000000..a353663bf1517 --- /dev/null +++ b/quay.io/biocontainers/strainify/container.yaml @@ -0,0 +1,47 @@ +url: https://biocontainers.pro/tools/strainify +maintainer: '@vsoch' +description: singularity registry hpc automated addition for strainify +latest: + 1.2.0--h780a10f_0: + sha256:48f874347f27b975e806bba9a434471d168a4de8e814eef60510922fc42a76d7 +tags: + 1.2.0--h780a10f_0: + sha256:48f874347f27b975e806bba9a434471d168a4de8e814eef60510922fc42a76d7 +docker: quay.io/biocontainers/strainify +aliases: + Phi: /usr/local/bin/Phi + Profile: /usr/local/bin/Profile + extend.py: /usr/local/bin/extend.py + git-filter-repo: /usr/local/bin/git-filter-repo + harvesttools: /usr/local/bin/harvesttools + logger.py: /usr/local/bin/logger.py + parsnp: /usr/local/bin/parsnp + partition.py: /usr/local/bin/partition.py + strainify: /usr/local/bin/strainify + template.ini: /usr/local/bin/template.ini + wgatools: /usr/local/bin/wgatools + gff2gff: /usr/local/bin/gff2gff + roh-viz: /usr/local/bin/roh-viz + vrfs-variances: /usr/local/bin/vrfs-variances + scalar: /usr/local/bin/scalar + phc: /usr/local/bin/phc + fastANI: /usr/local/bin/fastANI + eido: /usr/local/bin/eido + git: /usr/local/bin/git + git-cvsserver: /usr/local/bin/git-cvsserver + git-receive-pack: /usr/local/bin/git-receive-pack + git-shell: /usr/local/bin/git-shell + git-upload-archive: /usr/local/bin/git-upload-archive + git-upload-pack: /usr/local/bin/git-upload-pack + gitk: /usr/local/bin/gitk + raxmlHPC: /usr/local/bin/raxmlHPC + raxmlHPC-AVX2: /usr/local/bin/raxmlHPC-AVX2 + raxmlHPC-PTHREADS: /usr/local/bin/raxmlHPC-PTHREADS + raxmlHPC-PTHREADS-AVX2: /usr/local/bin/raxmlHPC-PTHREADS-AVX2 + raxmlHPC-PTHREADS-SSE3: /usr/local/bin/raxmlHPC-PTHREADS-SSE3 + raxmlHPC-SSE3: /usr/local/bin/raxmlHPC-SSE3 + typer: /usr/local/bin/typer + rst2html: /usr/local/bin/rst2html + rst2html4: /usr/local/bin/rst2html4 + rst2html5: /usr/local/bin/rst2html5 + rst2latex: /usr/local/bin/rst2latex diff --git a/quay.io/biocontainers/tau-community-detection/container.yaml b/quay.io/biocontainers/tau-community-detection/container.yaml new file mode 100644 index 0000000000000..b44d89675af81 --- /dev/null +++ b/quay.io/biocontainers/tau-community-detection/container.yaml @@ -0,0 +1,20 @@ +url: https://biocontainers.pro/tools/tau-community-detection +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + tau-community-detection +latest: + 1.2.11--pyhdfd78af_0: + sha256:fa9692d1c9bde5bbee0633acdb1316cfd9e55cbd7be0a2a005a392cf412ee96f +tags: + 1.2.11--pyhdfd78af_0: + sha256:fa9692d1c9bde5bbee0633acdb1316cfd9e55cbd7be0a2a005a392cf412ee96f +docker: quay.io/biocontainers/tau-community-detection +aliases: + tau: /usr/local/bin/tau + igraph: /usr/local/bin/igraph + idle3.14: /usr/local/bin/idle3.14 + pydoc3.14: /usr/local/bin/pydoc3.14 + python3.14: /usr/local/bin/python3.14 + python3.14-config: /usr/local/bin/python3.14-config + glpsol: /usr/local/bin/glpsol + numpy-config: /usr/local/bin/numpy-config diff --git a/quay.io/biocontainers/transvar/container.yaml b/quay.io/biocontainers/transvar/container.yaml new file mode 100644 index 0000000000000..53039ef0d7a73 --- /dev/null +++ b/quay.io/biocontainers/transvar/container.yaml @@ -0,0 +1,19 @@ +url: https://biocontainers.pro/tools/transvar +maintainer: '@vsoch' +description: singularity registry hpc automated addition for transvar +latest: + 2.5.10.20211024--py310h5a5e57a_0: + sha256:8fb380bad393d03e0a1db329c9ff6553faf0801c5bb82930e5d04a96d473f6dc +tags: + 2.5.10.20211024--py310h5a5e57a_0: + sha256:8fb380bad393d03e0a1db329c9ff6553faf0801c5bb82930e5d04a96d473f6dc +docker: quay.io/biocontainers/transvar +aliases: + transvar: /usr/local/bin/transvar + futurize: /usr/local/bin/futurize + pasteurize: /usr/local/bin/pasteurize + 2to3-3.10: /usr/local/bin/2to3-3.10 + idle3.10: /usr/local/bin/idle3.10 + pydoc3.10: /usr/local/bin/pydoc3.10 + python3.10: /usr/local/bin/python3.10 + python3.10-config: /usr/local/bin/python3.10-config diff --git a/quay.io/biocontainers/virusdetect/container.yaml b/quay.io/biocontainers/virusdetect/container.yaml new file mode 100644 index 0000000000000..e46c9c4bf72ee --- /dev/null +++ b/quay.io/biocontainers/virusdetect/container.yaml @@ -0,0 +1,44 @@ +url: https://biocontainers.pro/tools/virusdetect +maintainer: '@vsoch' +description: singularity registry hpc automated addition for virusdetect +latest: + 2.0.0a0--pyhdfd78af_0: + sha256:7fc54d6f85c734246f192c83a46c8a1978a406499c4135a29d6119b766a485d2 +tags: + 2.0.0a0--pyhdfd78af_0: + sha256:7fc54d6f85c734246f192c83a46c8a1978a406499c4135a29d6119b766a485d2 +docker: quay.io/biocontainers/virusdetect +aliases: + binspreader: /usr/local/bin/binspreader + pathracer: /usr/local/bin/pathracer + pathracer-seq-fs: /usr/local/bin/pathracer-seq-fs + spades-gfa-split: /usr/local/bin/spades-gfa-split + spades-hpc: /usr/local/bin/spades-hpc + virusdetect: /usr/local/bin/virusdetect + extract_exons.py: /usr/local/bin/extract_exons.py + extract_splice_sites.py: /usr/local/bin/extract_splice_sites.py + hisat2_read_statistics.py: /usr/local/bin/hisat2_read_statistics.py + hisat2: /usr/local/bin/hisat2 + hisat2-inspect: /usr/local/bin/hisat2-inspect + hisat2-inspect-l: /usr/local/bin/hisat2-inspect-l + hisat2-inspect-s: /usr/local/bin/hisat2-inspect-s + hisat2_extract_exons.py: /usr/local/bin/hisat2_extract_exons.py + hisat2_extract_snps_haplotypes_UCSC.py: + /usr/local/bin/hisat2_extract_snps_haplotypes_UCSC.py + hisat2_extract_snps_haplotypes_VCF.py: + /usr/local/bin/hisat2_extract_snps_haplotypes_VCF.py + hisat2_extract_splice_sites.py: /usr/local/bin/hisat2_extract_splice_sites.py + hisat2_simulate_reads.py: /usr/local/bin/hisat2_simulate_reads.py + hisat2-align-l: /usr/local/bin/hisat2-align-l + hisat2-align-s: /usr/local/bin/hisat2-align-s + hisat2-build: /usr/local/bin/hisat2-build + hisat2-build-l: /usr/local/bin/hisat2-build-l + hisat2-build-s: /usr/local/bin/hisat2-build-s + coronaspades.py: /usr/local/bin/coronaspades.py + metaplasmidspades.py: /usr/local/bin/metaplasmidspades.py + metaviralspades.py: /usr/local/bin/metaviralspades.py + rnaviralspades.py: /usr/local/bin/rnaviralspades.py + velvetg: /usr/local/bin/velvetg + velveth: /usr/local/bin/velveth + archive-nlmnlp: /usr/local/bin/archive-nlmnlp + archive-pids: /usr/local/bin/archive-pids diff --git a/quay.io/biocontainers/xloci/container.yaml b/quay.io/biocontainers/xloci/container.yaml new file mode 100644 index 0000000000000..a133da69d6228 --- /dev/null +++ b/quay.io/biocontainers/xloci/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/xloci +maintainer: '@vsoch' +description: singularity registry hpc automated addition for xloci +latest: + 0.0.4--hd612981_0: + sha256:66c800a0028810d25e8768b8c4501c3cdb2c82ca4d250eb9a61808ef0facb073 +tags: + 0.0.4--hd612981_0: + sha256:66c800a0028810d25e8768b8c4501c3cdb2c82ca4d250eb9a61808ef0facb073 +docker: quay.io/biocontainers/xloci +aliases: + xloci: /usr/local/bin/xloci