[bot] update/containers-2026-04-20

quay.io/biocontainers/atol-annotation-report/container.yaml

@@ -0,0 +1,18 @@
+url: https://biocontainers.pro/tools/atol-annotation-report
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for 
+  atol-annotation-report
+latest:
+  0.1.1--pyhdfd78af_0: 
+    sha256:ba4c5245319748cc3d7a0360db31f3a34fcdccedbb24255803516e2b42e3eeef
+tags:
+  0.1.1--pyhdfd78af_0: 
+    sha256:ba4c5245319748cc3d7a0360db31f3a34fcdccedbb24255803516e2b42e3eeef
+docker: quay.io/biocontainers/atol-annotation-report
+aliases:
+  atol-annotation-report: /usr/local/bin/atol-annotation-report
+  2to3-3.12: /usr/local/bin/2to3-3.12
+  idle3.12: /usr/local/bin/idle3.12
+  pydoc3.12: /usr/local/bin/pydoc3.12
+  python3.12: /usr/local/bin/python3.12
+  python3.12-config: /usr/local/bin/python3.12-config

quay.io/biocontainers/bacprune/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/bacprune
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for bacprune
+latest:
+  0.9.0--h4349ce8_0: 
+    sha256:7983dde92a1f40851e1c110b5dbec5b61e0c60f8ef500f5199a42bb41839b447
+tags:
+  0.9.0--h4349ce8_0: 
+    sha256:7983dde92a1f40851e1c110b5dbec5b61e0c60f8ef500f5199a42bb41839b447
+docker: quay.io/biocontainers/bacprune
+aliases:
+  bacprune: /usr/local/bin/bacprune

quay.io/biocontainers/bam-tide/container.yaml

@@ -0,0 +1,20 @@
+url: https://biocontainers.pro/tools/bam-tide
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for bam-tide
+latest:
+  1.2.3--hdaf81d9_0: 
+    sha256:7123c8c72bb12c48120763d6432a9fccbd88194c6f4ae9feb51d15e3cd7750eb
+tags:
+  1.2.3--hdaf81d9_0: 
+    sha256:7123c8c72bb12c48120763d6432a9fccbd88194c6f4ae9feb51d15e3cd7750eb
+docker: quay.io/biocontainers/bam-tide
+aliases:
+  bam-coverage: /usr/local/bin/bam-coverage
+  bam-quant: /usr/local/bin/bam-quant
+  bam-subset-tag: /usr/local/bin/bam-subset-tag
+  bw-compare: /usr/local/bin/bw-compare
+  ref-cache: /usr/local/bin/ref-cache
+  annot-tsv: /usr/local/bin/annot-tsv
+  htsfile: /usr/local/bin/htsfile
+  bgzip: /usr/local/bin/bgzip
+  tabix: /usr/local/bin/tabix

quay.io/biocontainers/bioconductor-islify/container.yaml

@@ -0,0 +1,36 @@
+url: https://biocontainers.pro/tools/bioconductor-islify
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for bioconductor-islify
+latest:
+  1.2.0--r45hdfd78af_0: 
+    sha256:079606b291702abd80ab14e2883567707a3858eb7b21db9f46131cd995aeed71
+tags:
+  1.2.0--r45hdfd78af_0: 
+    sha256:079606b291702abd80ab14e2883567707a3858eb7b21db9f46131cd995aeed71
+docker: quay.io/biocontainers/bioconductor-islify
+aliases:
+  jnativescan: /usr/local/bin/jnativescan
+  hb-raster: /usr/local/bin/hb-raster
+  hb-vector: /usr/local/bin/hb-vector
+  jwebserver: /usr/local/bin/jwebserver
+  pandoc-lua: /usr/local/bin/pandoc-lua
+  pandoc-server: /usr/local/bin/pandoc-server
+  jpackage: /usr/local/bin/jpackage
+  fftw-wisdom: /usr/local/bin/fftw-wisdom
+  fftw-wisdom-to-conf: /usr/local/bin/fftw-wisdom-to-conf
+  fftwf-wisdom: /usr/local/bin/fftwf-wisdom
+  fftwl-wisdom: /usr/local/bin/fftwl-wisdom
+  cups-config: /usr/local/bin/cups-config
+  ippeveprinter: /usr/local/bin/ippeveprinter
+  ipptool: /usr/local/bin/ipptool
+  x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
+  pandoc: /usr/local/bin/pandoc
+  jfr: /usr/local/bin/jfr
+  jdeprscan: /usr/local/bin/jdeprscan
+  jhsdb: /usr/local/bin/jhsdb
+  jimage: /usr/local/bin/jimage
+  jlink: /usr/local/bin/jlink
+  jmod: /usr/local/bin/jmod
+  jshell: /usr/local/bin/jshell
+  aserver: /usr/local/bin/aserver
+  jdeps: /usr/local/bin/jdeps

quay.io/biocontainers/biofastq-a/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/biofastq-a
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for biofastq-a
+latest:
+  2.2.0--h4349ce8_0: 
+    sha256:89ddc22438578f1d0a6bd73c32d7f1da3309e031eb729bbd73fe3acdea4cae6d
+tags:
+  2.2.0--h4349ce8_0: 
+    sha256:89ddc22438578f1d0a6bd73c32d7f1da3309e031eb729bbd73fe3acdea4cae6d
+docker: quay.io/biocontainers/biofastq-a
+aliases:
+  biofastq-a: /usr/local/bin/biofastq-a

quay.io/biocontainers/cycsim/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/cycsim
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for cycsim
+latest:
+  1.0.4--h4eafe19_0: 
+    sha256:9970b472772bb99782875e4c823db546dbac57a0fcb288ac1ac53687d26c07a9
+tags:
+  1.0.4--h4eafe19_0: 
+    sha256:9970b472772bb99782875e4c823db546dbac57a0fcb288ac1ac53687d26c07a9
+docker: quay.io/biocontainers/cycsim
+aliases:
+  cycsim: /usr/local/bin/cycsim

quay.io/biocontainers/decodiphy/container.yaml

@@ -0,0 +1,17 @@
+url: https://biocontainers.pro/tools/decodiphy
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for decodiphy
+latest:
+  1.2.3--pyhdfd78af_0: 
+    sha256:caef315da2b290f91952a7a4a221fc1a991da7fdcebb596a549e6641ff008838
+tags:
+  1.2.3--pyhdfd78af_0: 
+    sha256:caef315da2b290f91952a7a4a221fc1a991da7fdcebb596a549e6641ff008838
+docker: quay.io/biocontainers/decodiphy
+aliases:
+  decodiphy: /usr/local/bin/decodiphy
+  2to3-3.12: /usr/local/bin/2to3-3.12
+  idle3.12: /usr/local/bin/idle3.12
+  pydoc3.12: /usr/local/bin/pydoc3.12
+  python3.12: /usr/local/bin/python3.12
+  python3.12-config: /usr/local/bin/python3.12-config

quay.io/biocontainers/eggs/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/eggs
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for eggs
+latest:
+  1.0.0--hb7acf71_0: 
+    sha256:f8c24644062f61167c6e110a6c55b0c35dfa47aa0b16a17a39567130a1d78ad3
+tags:
+  1.0.0--hb7acf71_0: 
+    sha256:f8c24644062f61167c6e110a6c55b0c35dfa47aa0b16a17a39567130a1d78ad3
+docker: quay.io/biocontainers/eggs
+aliases:
+  eggs: /usr/local/bin/eggs

quay.io/biocontainers/fg-stitch/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/fg-stitch
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for fg-stitch
+latest:
+  0.1.2--h54198d6_0: 
+    sha256:a707e0e19a73a3da135c269f2bd4df3b77b6a4beaf19b3ce04ad5dc77d4387d0
+tags:
+  0.1.2--h54198d6_0: 
+    sha256:a707e0e19a73a3da135c269f2bd4df3b77b6a4beaf19b3ce04ad5dc77d4387d0
+docker: quay.io/biocontainers/fg-stitch
+aliases:
+  stitch: /usr/local/bin/stitch

quay.io/biocontainers/genomemask/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/genomemask
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for genomemask
+latest:
+  0.0.3--hd612981_0: 
+    sha256:3447c77df2d6dc8c2836ebc572b9c7b8136bc5df67b570a8898a1f7c5ce23bb5
+tags:
+  0.0.3--hd612981_0: 
+    sha256:3447c77df2d6dc8c2836ebc572b9c7b8136bc5df67b570a8898a1f7c5ce23bb5
+docker: quay.io/biocontainers/genomemask
+aliases:
+  genomemask: /usr/local/bin/genomemask

quay.io/biocontainers/grit-genomics/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/grit-genomics
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for grit-genomics
+latest:
+  0.1.1--h79ce301_0: 
+    sha256:bf5df0db36c16f32dbb6558fd04a4f0f4a3ebc867a8986bf0fb9149e0dd037a5
+tags:
+  0.1.1--h79ce301_0: 
+    sha256:bf5df0db36c16f32dbb6558fd04a4f0f4a3ebc867a8986bf0fb9149e0dd037a5
+docker: quay.io/biocontainers/grit-genomics
+aliases:
+  grit: /usr/local/bin/grit

quay.io/biocontainers/haplophaser/container.yaml

@@ -0,0 +1,38 @@
+url: https://biocontainers.pro/tools/haplophaser
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for haplophaser
+latest:
+  0.1.1--pyhdfd78af_0: 
+    sha256:6ac9e135da73daedfd2c0393a1aee53818bc243e008539666b120cf7631b4743
+tags:
+  0.1.1--pyhdfd78af_0: 
+    sha256:6ac9e135da73daedfd2c0393a1aee53818bc243e008539666b120cf7631b4743
+docker: quay.io/biocontainers/haplophaser
+aliases:
+  chromoplot: /usr/local/bin/chromoplot
+  haplophaser: /usr/local/bin/haplophaser
+  cyvcf2: /usr/local/bin/cyvcf2
+  typer: /usr/local/bin/typer
+  ref-cache: /usr/local/bin/ref-cache
+  coloredlogs: /usr/local/bin/coloredlogs
+  humanfriendly: /usr/local/bin/humanfriendly
+  markdown-it: /usr/local/bin/markdown-it
+  annot-tsv: /usr/local/bin/annot-tsv
+  qconvex: /usr/local/bin/qconvex
+  qdelaunay: /usr/local/bin/qdelaunay
+  qhalf: /usr/local/bin/qhalf
+  qhull: /usr/local/bin/qhull
+  qvoronoi: /usr/local/bin/qvoronoi
+  rbox: /usr/local/bin/rbox
+  idle3.13: /usr/local/bin/idle3.13
+  pydoc3.13: /usr/local/bin/pydoc3.13
+  python3.13: /usr/local/bin/python3.13
+  python3.13-config: /usr/local/bin/python3.13-config
+  pygmentize: /usr/local/bin/pygmentize
+  numpy-config: /usr/local/bin/numpy-config
+  fonttools: /usr/local/bin/fonttools
+  pyftmerge: /usr/local/bin/pyftmerge
+  pyftsubset: /usr/local/bin/pyftsubset
+  ttx: /usr/local/bin/ttx
+  brotli: /usr/local/bin/brotli
+  htsfile: /usr/local/bin/htsfile

quay.io/biocontainers/metalcoordanalysis/container.yaml

@@ -0,0 +1,19 @@
+url: https://biocontainers.pro/tools/metalcoordanalysis
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for metalcoordanalysis
+latest:
+  0.2.13--pyhdfd78af_0: 
+    sha256:704f9cfc833e46e62a7dfc10c3292f43a5e368c542b9a70bceb441902a6ef110
+tags:
+  0.2.13--pyhdfd78af_0: 
+    sha256:704f9cfc833e46e62a7dfc10c3292f43a5e368c542b9a70bceb441902a6ef110
+docker: quay.io/biocontainers/metalcoordanalysis
+aliases:
+  gemmi: /usr/local/bin/gemmi
+  metalCoord: /usr/local/bin/metalCoord
+  idle3.14: /usr/local/bin/idle3.14
+  pydoc3.14: /usr/local/bin/pydoc3.14
+  python3.14: /usr/local/bin/python3.14
+  python3.14-config: /usr/local/bin/python3.14-config
+  numpy-config: /usr/local/bin/numpy-config
+  tqdm: /usr/local/bin/tqdm

quay.io/biocontainers/metasmash/container.yaml

@@ -0,0 +1,51 @@
+url: https://biocontainers.pro/tools/metasmash
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for metasmash
+latest:
+  0.1.0--pyhdfd78af_0: 
+    sha256:7d4bafb9952292119fef53f58b09c7ef26cb7282c7c766793fc02b194012b918
+tags:
+  0.1.0--pyhdfd78af_0: 
+    sha256:7d4bafb9952292119fef53f58b09c7ef26cb7282c7c766793fc02b194012b918
+docker: quay.io/biocontainers/metasmash
+aliases:
+  brawn: /usr/local/bin/brawn
+  download-antismash-databases: /usr/local/bin/download-antismash-databases
+  hmmalign2: /usr/local/bin/hmmalign2
+  hmmbuild2: /usr/local/bin/hmmbuild2
+  hmmcalibrate2: /usr/local/bin/hmmcalibrate2
+  hmmconvert2: /usr/local/bin/hmmconvert2
+  hmmemit2: /usr/local/bin/hmmemit2
+  hmmfetch2: /usr/local/bin/hmmfetch2
+  hmmindex2: /usr/local/bin/hmmindex2
+  hmmpfam2: /usr/local/bin/hmmpfam2
+  hmmsearch2: /usr/local/bin/hmmsearch2
+  metasmash: /usr/local/bin/metasmash
+  moods-dna.py: /usr/local/bin/moods-dna.py
+  pysassc: /usr/local/bin/pysassc
+  archive-nlmnlp: /usr/local/bin/archive-nlmnlp
+  archive-pids: /usr/local/bin/archive-pids
+  download-flatfile: /usr/local/bin/download-flatfile
+  ecollect: /usr/local/bin/ecollect
+  gbf2facds: /usr/local/bin/gbf2facds
+  gbf2tbl: /usr/local/bin/gbf2tbl
+  gff-sort: /usr/local/bin/gff-sort
+  gff2xml: /usr/local/bin/gff2xml
+  pair-at-a-time: /usr/local/bin/pair-at-a-time
+  print-missing-subranges: /usr/local/bin/print-missing-subranges
+  sort-by-length: /usr/local/bin/sort-by-length
+  xcommon.sh: /usr/local/bin/xcommon.sh
+  xfetch: /usr/local/bin/xfetch
+  xfetch.ini: /usr/local/bin/xfetch.ini
+  xfilter: /usr/local/bin/xfilter
+  xinfo: /usr/local/bin/xinfo
+  xlink: /usr/local/bin/xlink
+  xlink.ini: /usr/local/bin/xlink.ini
+  xsearch: /usr/local/bin/xsearch
+  aggregate_scores_in_intervals.py: 
+    /usr/local/bin/aggregate_scores_in_intervals.py
+  align_print_template.py: /usr/local/bin/align_print_template.py
+  axt_extract_ranges.py: /usr/local/bin/axt_extract_ranges.py
+  axt_to_fasta.py: /usr/local/bin/axt_to_fasta.py
+  axt_to_lav.py: /usr/local/bin/axt_to_lav.py
+  axt_to_maf.py: /usr/local/bin/axt_to_maf.py

quay.io/biocontainers/mnbc-me/container.yaml

@@ -0,0 +1,37 @@
+url: https://biocontainers.pro/tools/mnbc-me
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for mnbc-me
+latest:
+  1.0--hdfd78af_0: 
+    sha256:97f329919df352ff17737c4df076bd0d768b5361a78c3aa2401fcca318d70eee
+tags:
+  1.0--hdfd78af_0: 
+    sha256:97f329919df352ff17737c4df076bd0d768b5361a78c3aa2401fcca318d70eee
+docker: quay.io/biocontainers/mnbc-me
+aliases:
+  mnbc-me: /usr/local/bin/mnbc-me
+  jnativescan: /usr/local/bin/jnativescan
+  hb-raster: /usr/local/bin/hb-raster
+  hb-vector: /usr/local/bin/hb-vector
+  jwebserver: /usr/local/bin/jwebserver
+  jpackage: /usr/local/bin/jpackage
+  cups-config: /usr/local/bin/cups-config
+  ippeveprinter: /usr/local/bin/ippeveprinter
+  ipptool: /usr/local/bin/ipptool
+  jfr: /usr/local/bin/jfr
+  jdeprscan: /usr/local/bin/jdeprscan
+  jhsdb: /usr/local/bin/jhsdb
+  jimage: /usr/local/bin/jimage
+  jlink: /usr/local/bin/jlink
+  jmod: /usr/local/bin/jmod
+  jshell: /usr/local/bin/jshell
+  aserver: /usr/local/bin/aserver
+  jdeps: /usr/local/bin/jdeps
+  jar: /usr/local/bin/jar
+  jarsigner: /usr/local/bin/jarsigner
+  java: /usr/local/bin/java
+  javac: /usr/local/bin/javac
+  javadoc: /usr/local/bin/javadoc
+  javap: /usr/local/bin/javap
+  jcmd: /usr/local/bin/jcmd
+  jconsole: /usr/local/bin/jconsole

quay.io/biocontainers/ohe-rs/container.yaml

@@ -0,0 +1,17 @@
+url: https://biocontainers.pro/tools/ohe-rs
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for ohe-rs
+latest:
+  0.1.0--py310h7e03b2b_0: 
+    sha256:d111374e330acd6b4853fb7f59295984e5b9f3b63547bf18e902446a2454366a
+tags:
+  0.1.0--py310h7e03b2b_0: 
+    sha256:d111374e330acd6b4853fb7f59295984e5b9f3b63547bf18e902446a2454366a
+docker: quay.io/biocontainers/ohe-rs
+aliases:
+  numpy-config: /usr/local/bin/numpy-config
+  2to3-3.10: /usr/local/bin/2to3-3.10
+  idle3.10: /usr/local/bin/idle3.10
+  pydoc3.10: /usr/local/bin/pydoc3.10
+  python3.10: /usr/local/bin/python3.10
+  python3.10-config: /usr/local/bin/python3.10-config

quay.io/biocontainers/panmap/container.yaml

@@ -0,0 +1,38 @@
+url: https://biocontainers.pro/tools/panmap
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for panmap
+latest:
+  0.1.1--0: 
+    sha256:d248c32dfa84bf82ed7632bb9e142e4bb9c4c6f940a0d94512f20ed8d00cbe04
+tags:
+  0.1.1--0: 
+    sha256:d248c32dfa84bf82ed7632bb9e142e4bb9c4c6f940a0d94512f20ed8d00cbe04
+docker: quay.io/biocontainers/panmap
+aliases:
+  panmanUtils: /usr/local/bin/panmanUtils
+  panmap: /usr/local/bin/panmap
+  protoc-31.1.0: /usr/local/bin/protoc-31.1.0
+  protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0
+  protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0
+  protoc-gen-upb: /usr/local/bin/protoc-gen-upb
+  protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs
+  capnp: /usr/local/bin/capnp
+  capnpc: /usr/local/bin/capnpc
+  capnpc-c++: /usr/local/bin/capnpc-c++
+  capnpc-capnp: /usr/local/bin/capnpc-capnp
+  ref-cache: /usr/local/bin/ref-cache
+  annot-tsv: /usr/local/bin/annot-tsv
+  hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid
+  hwloc-annotate: /usr/local/bin/hwloc-annotate
+  hwloc-bind: /usr/local/bin/hwloc-bind
+  hwloc-calc: /usr/local/bin/hwloc-calc
+  hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir
+  hwloc-diff: /usr/local/bin/hwloc-diff
+  hwloc-distrib: /usr/local/bin/hwloc-distrib
+  hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology
+  hwloc-info: /usr/local/bin/hwloc-info
+  hwloc-ls: /usr/local/bin/hwloc-ls
+  hwloc-patch: /usr/local/bin/hwloc-patch
+  hwloc-ps: /usr/local/bin/hwloc-ps
+  lstopo: /usr/local/bin/lstopo
+  lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics