[bot] update/containers-2026-04-28

quay.io/biocontainers/holodeck/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/holodeck
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for holodeck
+latest:
+  0.2.0--hd612981_0: 
+    sha256:e3e6dee6f6668e765a9ebf834cbc07d96f39d16f7049232641906af36e29bf84
+tags:
+  0.2.0--hd612981_0: 
+    sha256:e3e6dee6f6668e765a9ebf834cbc07d96f39d16f7049232641906af36e29bf84
+docker: quay.io/biocontainers/holodeck
+aliases:
+  holodeck: /usr/local/bin/holodeck

quay.io/biocontainers/janusx/container.yaml

@@ -0,0 +1,38 @@
+url: https://biocontainers.pro/tools/janusx
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for janusx
+latest:
+  1.0.20--py310h83f8559_0: 
+    sha256:aca177dc764d6d3beec5aeaa6273ec366673d4ce157343a7f0633d87e01e43d5
+tags:
+  1.0.20--py310h83f8559_0: 
+    sha256:aca177dc764d6d3beec5aeaa6273ec366673d4ce157343a7f0633d87e01e43d5
+docker: quay.io/biocontainers/janusx
+aliases:
+  jx: /usr/local/bin/jx
+  jxpy: /usr/local/bin/jxpy
+  markdown-it: /usr/local/bin/markdown-it
+  hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid
+  hwloc-annotate: /usr/local/bin/hwloc-annotate
+  hwloc-bind: /usr/local/bin/hwloc-bind
+  hwloc-calc: /usr/local/bin/hwloc-calc
+  hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir
+  hwloc-diff: /usr/local/bin/hwloc-diff
+  hwloc-distrib: /usr/local/bin/hwloc-distrib
+  hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology
+  hwloc-info: /usr/local/bin/hwloc-info
+  hwloc-ls: /usr/local/bin/hwloc-ls
+  hwloc-patch: /usr/local/bin/hwloc-patch
+  hwloc-ps: /usr/local/bin/hwloc-ps
+  lstopo: /usr/local/bin/lstopo
+  lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics
+  qconvex: /usr/local/bin/qconvex
+  qdelaunay: /usr/local/bin/qdelaunay
+  qhalf: /usr/local/bin/qhalf
+  qhull: /usr/local/bin/qhull
+  qvoronoi: /usr/local/bin/qvoronoi
+  rbox: /usr/local/bin/rbox
+  pygmentize: /usr/local/bin/pygmentize
+  numpy-config: /usr/local/bin/numpy-config
+  tqdm: /usr/local/bin/tqdm
+  fonttools: /usr/local/bin/fonttools

quay.io/biocontainers/lanceotron/container.yaml

@@ -0,0 +1,37 @@
+url: https://biocontainers.pro/tools/lanceotron
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for lanceotron
+latest:
+  1.2.7--pyhdfd78af_0: 
+    sha256:f971884131aefeabbb79b6f7694b1444114480e1c6488a46e5cfa85aead804b5
+tags:
+  1.2.7--pyhdfd78af_0: 
+    sha256:f971884131aefeabbb79b6f7694b1444114480e1c6488a46e5cfa85aead804b5
+docker: quay.io/biocontainers/lanceotron
+aliases:
+  lanceotron: /usr/local/bin/lanceotron
+  flatc: /usr/local/bin/flatc
+  protoc-31.1.0: /usr/local/bin/protoc-31.1.0
+  protoc-gen-upb-31.1.0: /usr/local/bin/protoc-gen-upb-31.1.0
+  protoc-gen-upbdefs-31.1.0: /usr/local/bin/protoc-gen-upbdefs-31.1.0
+  import_pb_to_tensorboard: /usr/local/bin/import_pb_to_tensorboard
+  h2benchmark: /usr/local/bin/h2benchmark
+  checksum-profile: /usr/local/bin/checksum-profile
+  protoc-gen-upb: /usr/local/bin/protoc-gen-upb
+  protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs
+  tf_upgrade_v2: /usr/local/bin/tf_upgrade_v2
+  tflite_convert: /usr/local/bin/tflite_convert
+  saved_model_cli: /usr/local/bin/saved_model_cli
+  toco: /usr/local/bin/toco
+  tensorboard: /usr/local/bin/tensorboard
+  elasticurl: /usr/local/bin/elasticurl
+  markdown_py: /usr/local/bin/markdown_py
+  markdown-it: /usr/local/bin/markdown-it
+  natsort: /usr/local/bin/natsort
+  grpc_cpp_plugin: /usr/local/bin/grpc_cpp_plugin
+  grpc_csharp_plugin: /usr/local/bin/grpc_csharp_plugin
+  grpc_node_plugin: /usr/local/bin/grpc_node_plugin
+  grpc_objective_c_plugin: /usr/local/bin/grpc_objective_c_plugin
+  grpc_php_plugin: /usr/local/bin/grpc_php_plugin
+  grpc_python_plugin: /usr/local/bin/grpc_python_plugin
+  grpc_ruby_plugin: /usr/local/bin/grpc_ruby_plugin

quay.io/biocontainers/markadoros/container.yaml

@@ -0,0 +1,43 @@
+url: https://biocontainers.pro/tools/markadoros
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for markadoros
+latest:
+  1.0.0--pyh106432d_0: 
+    sha256:72ab85e586102803c1d43660427945b965b385e042aa7b3e432266ceb0f6e1c5
+tags:
+  1.0.0--pyh106432d_0: 
+    sha256:72ab85e586102803c1d43660427945b965b385e042aa7b3e432266ceb0f6e1c5
+docker: quay.io/biocontainers/markadoros
+aliases:
+  binspreader: /usr/local/bin/binspreader
+  hifiasm: /usr/local/bin/hifiasm
+  markadoros: /usr/local/bin/markadoros
+  pathracer: /usr/local/bin/pathracer
+  pathracer-seq-fs: /usr/local/bin/pathracer-seq-fs
+  spades-gfa-split: /usr/local/bin/spades-gfa-split
+  spades-hpc: /usr/local/bin/spades-hpc
+  coronaspades.py: /usr/local/bin/coronaspades.py
+  metaplasmidspades.py: /usr/local/bin/metaplasmidspades.py
+  metaviralspades.py: /usr/local/bin/metaviralspades.py
+  rnaviralspades.py: /usr/local/bin/rnaviralspades.py
+  spaligner: /usr/local/bin/spaligner
+  spades-convert-bin-to-fasta: /usr/local/bin/spades-convert-bin-to-fasta
+  spades-gsimplifier: /usr/local/bin/spades-gsimplifier
+  spades-kmer-estimating: /usr/local/bin/spades-kmer-estimating
+  spades-read-filter: /usr/local/bin/spades-read-filter
+  aria2c: /usr/local/bin/aria2c
+  spades-bwa: /usr/local/bin/spades-bwa
+  spades-core: /usr/local/bin/spades-core
+  spades-corrector-core: /usr/local/bin/spades-corrector-core
+  spades-gbuilder: /usr/local/bin/spades-gbuilder
+  spades-gmapper: /usr/local/bin/spades-gmapper
+  spades-hammer: /usr/local/bin/spades-hammer
+  spades-ionhammer: /usr/local/bin/spades-ionhammer
+  spades-kmercount: /usr/local/bin/spades-kmercount
+  gawk-5.3.1: /usr/local/bin/gawk-5.3.1
+  metaspades.py: /usr/local/bin/metaspades.py
+  plasmidspades.py: /usr/local/bin/plasmidspades.py
+  rnaspades.py: /usr/local/bin/rnaspades.py
+  spades.py: /usr/local/bin/spades.py
+  spades_init.py: /usr/local/bin/spades_init.py
+  mmseqs: /usr/local/bin/mmseqs

quay.io/biocontainers/molemap/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/molemap
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for molemap
+latest:
+  1.4.3.1--h5814d7d_0: 
+    sha256:468acceeeb9f65b2ef627724bb41efaeeaf0a593e8d0449ce1592b6f162c4867
+tags:
+  1.4.3.1--h5814d7d_0: 
+    sha256:468acceeeb9f65b2ef627724bb41efaeeaf0a593e8d0449ce1592b6f162c4867
+docker: quay.io/biocontainers/molemap
+aliases:
+  molemap: /usr/local/bin/molemap

quay.io/biocontainers/mytaxa/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/mytaxa
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for mytaxa
+latest:
+  1.2.0--hc52dbad_0: 
+    sha256:03d05f63fb5ffe8a2782149806df91f7d3445b98aeeee01c2103a439b8b2f3de
+tags:
+  1.2.0--hc52dbad_0: 
+    sha256:03d05f63fb5ffe8a2782149806df91f7d3445b98aeeee01c2103a439b8b2f3de
+docker: quay.io/biocontainers/mytaxa
+aliases:
+  MyTaxa: /usr/local/bin/MyTaxa

quay.io/biocontainers/oxbreaker/container.yaml

@@ -0,0 +1,51 @@
+url: https://biocontainers.pro/tools/oxbreaker
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for oxbreaker
+latest:
+  1.0--pyhdfd78af_0: 
+    sha256:d0e18369f7408d15084baa04aaf86a565ab09ffde970438df8789d9a05e387c9
+tags:
+  1.0--pyhdfd78af_0: 
+    sha256:d0e18369f7408d15084baa04aaf86a565ab09ffde970438df8789d9a05e387c9
+docker: quay.io/biocontainers/oxbreaker
+aliases:
+  gtk4-builder-tool: /usr/local/bin/gtk4-builder-tool
+  gtk4-demo: /usr/local/bin/gtk4-demo
+  gtk4-demo-application: /usr/local/bin/gtk4-demo-application
+  gtk4-encode-symbolic-svg: /usr/local/bin/gtk4-encode-symbolic-svg
+  gtk4-icon-editor: /usr/local/bin/gtk4-icon-editor
+  gtk4-image-tool: /usr/local/bin/gtk4-image-tool
+  gtk4-launch: /usr/local/bin/gtk4-launch
+  gtk4-node-editor: /usr/local/bin/gtk4-node-editor
+  gtk4-path-tool: /usr/local/bin/gtk4-path-tool
+  gtk4-print-editor: /usr/local/bin/gtk4-print-editor
+  gtk4-query-settings: /usr/local/bin/gtk4-query-settings
+  gtk4-rendernode-tool: /usr/local/bin/gtk4-rendernode-tool
+  gtk4-update-icon-cache: /usr/local/bin/gtk4-update-icon-cache
+  gtk4-widget-factory: /usr/local/bin/gtk4-widget-factory
+  oxbreaker: /usr/local/bin/oxbreaker
+  nextflow: /usr/local/bin/nextflow
+  g-ir-annotation-tool: /usr/local/bin/g-ir-annotation-tool
+  g-ir-compiler: /usr/local/bin/g-ir-compiler
+  g-ir-generate: /usr/local/bin/g-ir-generate
+  g-ir-inspect: /usr/local/bin/g-ir-inspect
+  g-ir-scanner: /usr/local/bin/g-ir-scanner
+  hb-raster: /usr/local/bin/hb-raster
+  hb-vector: /usr/local/bin/hb-vector
+  wayland-scanner: /usr/local/bin/wayland-scanner
+  gi-compile-repository: /usr/local/bin/gi-compile-repository
+  gi-decompile-typelib: /usr/local/bin/gi-decompile-typelib
+  gi-inspect-typelib: /usr/local/bin/gi-inspect-typelib
+  basenc: /usr/local/bin/basenc
+  b2sum: /usr/local/bin/b2sum
+  ls: /usr/local/bin/ls
+  base32: /usr/local/bin/base32
+  base64: /usr/local/bin/base64
+  basename: /usr/local/bin/basename
+  cat: /usr/local/bin/cat
+  chcon: /usr/local/bin/chcon
+  chgrp: /usr/local/bin/chgrp
+  chmod: /usr/local/bin/chmod
+  chown: /usr/local/bin/chown
+  chroot: /usr/local/bin/chroot
+  cksum: /usr/local/bin/cksum

quay.io/biocontainers/pandepth/container.yaml

@@ -0,0 +1,17 @@
+url: https://biocontainers.pro/tools/pandepth
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for pandepth
+latest:
+  2.26--h02cc909_0: 
+    sha256:a162dfb0dcf5fd7c448acbb2457ea7a9363e488136ae6c7c22ad22523813dca2
+tags:
+  2.26--h02cc909_0: 
+    sha256:a162dfb0dcf5fd7c448acbb2457ea7a9363e488136ae6c7c22ad22523813dca2
+docker: quay.io/biocontainers/pandepth
+aliases:
+  pandepth: /usr/local/bin/pandepth
+  ref-cache: /usr/local/bin/ref-cache
+  annot-tsv: /usr/local/bin/annot-tsv
+  htsfile: /usr/local/bin/htsfile
+  bgzip: /usr/local/bin/bgzip
+  tabix: /usr/local/bin/tabix

quay.io/biocontainers/pathview-plus/container.yaml

@@ -0,0 +1,38 @@
+url: https://biocontainers.pro/tools/pathview-plus
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for pathview-plus
+latest:
+  2.0.2--pyhdfd78af_0: 
+    sha256:3e639ea2d8a35a64a9841bd72b846e2fecd033fa2452e0710f2b29999f2d5a1c
+tags:
+  2.0.2--pyhdfd78af_0: 
+    sha256:3e639ea2d8a35a64a9841bd72b846e2fecd033fa2452e0710f2b29999f2d5a1c
+docker: quay.io/biocontainers/pathview-plus
+aliases:
+  pathview-cli.py: /usr/local/bin/pathview-cli.py
+  protoc-33.5.0: /usr/local/bin/protoc-33.5.0
+  protoc-gen-upb-33.5.0: /usr/local/bin/protoc-gen-upb-33.5.0
+  protoc-gen-upb_minitable-33.5.0: 
+    /usr/local/bin/protoc-gen-upb_minitable-33.5.0
+  protoc-gen-upbdefs-33.5.0: /usr/local/bin/protoc-gen-upbdefs-33.5.0
+  protoc-gen-upb_minitable: /usr/local/bin/protoc-gen-upb_minitable
+  h2benchmark: /usr/local/bin/h2benchmark
+  elastishadow: /usr/local/bin/elastishadow
+  checksum-profile: /usr/local/bin/checksum-profile
+  protoc-gen-upb: /usr/local/bin/protoc-gen-upb
+  protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs
+  elastipubsub5: /usr/local/bin/elastipubsub5
+  mqtt5_app: /usr/local/bin/mqtt5_app
+  mqtt5_canary: /usr/local/bin/mqtt5_canary
+  mqtt5canary: /usr/local/bin/mqtt5canary
+  elasticurl_cpp: /usr/local/bin/elasticurl_cpp
+  elastipubsub: /usr/local/bin/elastipubsub
+  elasticurl: /usr/local/bin/elasticurl
+  csv-import: /usr/local/bin/csv-import
+  orc-memory: /usr/local/bin/orc-memory
+  orc-scan: /usr/local/bin/orc-scan
+  timezone-dump: /usr/local/bin/timezone-dump
+  orc-contents: /usr/local/bin/orc-contents
+  orc-metadata: /usr/local/bin/orc-metadata
+  orc-statistics: /usr/local/bin/orc-statistics
+  gflags_completions.sh: /usr/local/bin/gflags_completions.sh

quay.io/biocontainers/perl-crypt-openssl-bignum/container.yaml

@@ -0,0 +1,11 @@
+url: https://biocontainers.pro/tools/perl-crypt-openssl-bignum
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for 
+  perl-crypt-openssl-bignum
+latest:
+  0.09--pl5321hd474d78_0: 
+    sha256:db9f98268360c700e36fdda139e620011c3772f4ee704a049c06b50515ed1b4b
+tags:
+  0.09--pl5321hd474d78_0: 
+    sha256:db9f98268360c700e36fdda139e620011c3772f4ee704a049c06b50515ed1b4b
+docker: quay.io/biocontainers/perl-crypt-openssl-bignum

quay.io/biocontainers/pymmseqs/container.yaml

@@ -0,0 +1,19 @@
+url: https://biocontainers.pro/tools/pymmseqs
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for pymmseqs
+latest:
+  1.0.7--pyh106432d_0: 
+    sha256:40ed84123bffcb3522ef297bdb9b3d6a92fabfdb022c6a16573fa828298d4c84
+tags:
+  1.0.7--pyh106432d_0: 
+    sha256:40ed84123bffcb3522ef297bdb9b3d6a92fabfdb022c6a16573fa828298d4c84
+docker: quay.io/biocontainers/pymmseqs
+aliases:
+  ipython3: /usr/local/bin/ipython3
+  ipython: /usr/local/bin/ipython
+  idle3.14: /usr/local/bin/idle3.14
+  pydoc3.14: /usr/local/bin/pydoc3.14
+  python3.14: /usr/local/bin/python3.14
+  python3.14-config: /usr/local/bin/python3.14-config
+  pygmentize: /usr/local/bin/pygmentize
+  numpy-config: /usr/local/bin/numpy-config

quay.io/biocontainers/r-orca/container.yaml

@@ -0,0 +1,15 @@
+url: https://biocontainers.pro/tools/r-orca
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for r-orca
+latest:
+  1.1_3--r45h67c2a1a_0: 
+    sha256:ee2a6dde21ac8f504e132262664584863b0c187916c444c9b31b386092b9e7f3
+tags:
+  1.1_3--r45h67c2a1a_0: 
+    sha256:ee2a6dde21ac8f504e132262664584863b0c187916c444c9b31b386092b9e7f3
+docker: quay.io/biocontainers/r-orca
+aliases:
+  hb-raster: /usr/local/bin/hb-raster
+  hb-vector: /usr/local/bin/hb-vector
+  x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
+  hb-info: /usr/local/bin/hb-info

quay.io/biocontainers/r-teddy/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/r-teddy
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for r-teddy
+latest:
+  1.0.3--r41hcf09f9e_0: 
+    sha256:fd9f0915fa0db0f05a6dc47aad203739f15af9b8801473ecccd8a1d39902a70c
+tags:
+  1.0.3--r41hcf09f9e_0: 
+    sha256:fd9f0915fa0db0f05a6dc47aad203739f15af9b8801473ecccd8a1d39902a70c
+docker: quay.io/biocontainers/r-teddy
+aliases:
+  x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg

quay.io/biocontainers/rastqc-nanopore/container.yaml

@@ -0,0 +1,38 @@
+url: https://biocontainers.pro/tools/rastqc-nanopore
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for rastqc-nanopore
+latest:
+  0.1.0--h2499bdc_0: 
+    sha256:9dff8b355d2e45e5a9d2021b2639387daa4368c13b975edfb66118a76d4a27c3
+tags:
+  0.1.0--h2499bdc_0: 
+    sha256:9dff8b355d2e45e5a9d2021b2639387daa4368c13b975edfb66118a76d4a27c3
+docker: quay.io/biocontainers/rastqc-nanopore
+aliases:
+  rastqc-nanopore: /usr/local/bin/rastqc-nanopore
+  protoc-33.5.0: /usr/local/bin/protoc-33.5.0
+  protoc-gen-upb-33.5.0: /usr/local/bin/protoc-gen-upb-33.5.0
+  protoc-gen-upb_minitable-33.5.0: 
+    /usr/local/bin/protoc-gen-upb_minitable-33.5.0
+  protoc-gen-upbdefs-33.5.0: /usr/local/bin/protoc-gen-upbdefs-33.5.0
+  protoc-gen-upb_minitable: /usr/local/bin/protoc-gen-upb_minitable
+  h2benchmark: /usr/local/bin/h2benchmark
+  elastishadow: /usr/local/bin/elastishadow
+  checksum-profile: /usr/local/bin/checksum-profile
+  protoc-gen-upb: /usr/local/bin/protoc-gen-upb
+  protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs
+  elastipubsub5: /usr/local/bin/elastipubsub5
+  mqtt5_app: /usr/local/bin/mqtt5_app
+  mqtt5_canary: /usr/local/bin/mqtt5_canary
+  mqtt5canary: /usr/local/bin/mqtt5canary
+  elasticurl_cpp: /usr/local/bin/elasticurl_cpp
+  elastipubsub: /usr/local/bin/elastipubsub
+  elasticurl: /usr/local/bin/elasticurl
+  csv-import: /usr/local/bin/csv-import
+  orc-memory: /usr/local/bin/orc-memory
+  orc-scan: /usr/local/bin/orc-scan
+  timezone-dump: /usr/local/bin/timezone-dump
+  orc-contents: /usr/local/bin/orc-contents
+  orc-metadata: /usr/local/bin/orc-metadata
+  orc-statistics: /usr/local/bin/orc-statistics
+  gflags_completions.sh: /usr/local/bin/gflags_completions.sh

quay.io/biocontainers/rastqc/container.yaml

@@ -0,0 +1,12 @@
+url: https://biocontainers.pro/tools/rastqc
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for rastqc
+latest:
+  0.1.0--hfa8f182_0: 
+    sha256:05a4e6b63b082e4cb15e498a8f0e83b0627b50b06027b9f3d1baaa041724780d
+tags:
+  0.1.0--hfa8f182_0: 
+    sha256:05a4e6b63b082e4cb15e498a8f0e83b0627b50b06027b9f3d1baaa041724780d
+docker: quay.io/biocontainers/rastqc
+aliases:
+  rastqc: /usr/local/bin/rastqc

quay.io/biocontainers/reaper-trim/container.yaml

@@ -0,0 +1,15 @@
+url: https://biocontainers.pro/tools/reaper-trim
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for reaper-trim
+latest:
+  17.257--h118bc1c_0: 
+    sha256:d124302115aadcb2cc8d70c68f2a0a0f21569feaed323fdb97d6e328cda87027
+tags:
+  17.257--h118bc1c_0: 
+    sha256:d124302115aadcb2cc8d70c68f2a0a0f21569feaed323fdb97d6e328cda87027
+docker: quay.io/biocontainers/reaper-trim
+aliases:
+  minion: /usr/local/bin/minion
+  reaper: /usr/local/bin/reaper
+  swan: /usr/local/bin/swan
+  tally: /usr/local/bin/tally