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Proposed Organization and Place for AI and Heuristic Predictions of BioPolymer properties#982

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trishorts:predictions
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Proposed Organization and Place for AI and Heuristic Predictions of BioPolymer properties#982
trishorts wants to merge 9 commits into
smith-chem-wisc:masterfrom
trishorts:predictions

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codecov Bot commented Nov 21, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 81.09%. Comparing base (b5715f6) to head (135cf79).

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@@           Coverage Diff           @@
##           master     #982   +/-   ##
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  Coverage   81.09%   81.09%           
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  Files         271      271           
  Lines       39144    39144           
  Branches     4292     4292           
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  Hits        31744    31744           
  Misses       6650     6650           
  Partials      750      750           
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Pull request overview

This PR establishes the organizational structure for a new "Predictions" project in mzLib, intended to house AI and heuristic prediction functionality for biopolymer properties. The PR adds placeholder classes for various prediction types (cross-section, detectability, elution/retention, and fragmentation) along with infrastructure classes for web clients and interfaces.

  • Added new Predictions project targeting .NET 8.0 to the solution
  • Created stub classes for different biopolymer property prediction types
  • Updated solution file with build configurations for the new project

Reviewed changes

Copilot reviewed 8 out of 8 changed files in this pull request and generated 1 comment.

Show a summary per file
File Description
mzLib/mzLib.sln Added Predictions project and "Any CPU" build configurations; updated Visual Studio version
mzLib/Predictions/Predictions.csproj New project file targeting .NET 8.0 with nullable reference types enabled
mzLib/Predictions/BioPolymerCrossSection.cs Placeholder class for cross-section predictions
mzLib/Predictions/BioPolymerDectectability.cs Placeholder class for detectability predictions (contains spelling error)
mzLib/Predictions/BioPolymerElutionRetention.cs Placeholder class for elution/retention time predictions
mzLib/Predictions/BioPolymerFragmentation.cs Placeholder class for fragmentation predictions
mzLib/Predictions/Interfaces.cs Placeholder class for interfaces (ambiguous naming)
mzLib/Predictions/WebClients.cs Placeholder class for web client functionality (generic naming)

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namespace Predictions
{
internal class BioPolymerDectectability
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The class name "BioPolymerDectectability" has a spelling error. It should be "BioPolymerDetectability" (with two 't's in "Detectability").

Suggested change
internal class BioPolymerDectectability
internal class BioPolymerDetectability

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2 participants